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@@ -115,7 +115,7 @@ |
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"#@markdown ### MSA options (custom MSA upload, single sequence, pairing mode)\n", |
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"msa_mode = \"MMseqs2 (UniRef+Environmental)\" #@param [\"MMseqs2 (UniRef+Environmental)\", \"MMseqs2 (UniRef only)\",\"single_sequence\",\"custom\"]\n", |
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"pair_mode = \"unpaired+paired\" #@param [\"unpaired+paired\",\"paired\",\"unpaired\"] {type:\"string\"}\n", |
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"#@markdown - \"unpaired+paired\" = pair sequences from same species + unpaired MSA, \"unpaired\" = seperate MSA for each chain, \"paired\" - only use paired sequences.\n", |
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"#@markdown - \"unpaired+paired\" = pair sequences from same species + unpaired MSA, \"unpaired\" = separate MSA for each chain, \"paired\" - only use paired sequences.\n", |
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"\n", |
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"# decide which a3m to use\n", |
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"if msa_mode.startswith(\"MMseqs2\"):\n", |
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