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  62. <h1 id="index">Index</h1>
  63. <div class="genindex-jumpbox">
  64. <a href="#C"><strong>C</strong></a>
  65. | <a href="#D"><strong>D</strong></a>
  66. | <a href="#F"><strong>F</strong></a>
  67. | <a href="#G"><strong>G</strong></a>
  68. | <a href="#I"><strong>I</strong></a>
  69. | <a href="#K"><strong>K</strong></a>
  70. | <a href="#L"><strong>L</strong></a>
  71. | <a href="#M"><strong>M</strong></a>
  72. | <a href="#P"><strong>P</strong></a>
  73. | <a href="#R"><strong>R</strong></a>
  74. | <a href="#S"><strong>S</strong></a>
  75. | <a href="#T"><strong>T</strong></a>
  76. | <a href="#U"><strong>U</strong></a>
  77. | <a href="#W"><strong>W</strong></a>
  78. </div>
  79. <h2 id="C">C</h2>
  80. <table style="width: 100%" class="indextable genindextable"><tr>
  81. <td style="width: 33%; vertical-align: top;"><ul>
  82. <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.compute_gram_matrices">compute_gram_matrices() (in module pygraph.utils.model_selection_precomputed)</a>
  83. </li>
  84. </ul></td>
  85. </tr></table>
  86. <h2 id="D">D</h2>
  87. <table style="width: 100%" class="indextable genindextable"><tr>
  88. <td style="width: 33%; vertical-align: top;"><ul>
  89. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.deleteWord">deleteWord() (pygraph.utils.trie.Trie method)</a>
  90. </li>
  91. </ul></td>
  92. <td style="width: 33%; vertical-align: top;"><ul>
  93. <li><a href="pygraph.utils.html#pygraph.utils.kernels.deltakernel">deltakernel() (in module pygraph.utils.kernels)</a>
  94. </li>
  95. <li><a href="pygraph.utils.html#pygraph.utils.utils.direct_product">direct_product() (in module pygraph.utils.utils)</a>
  96. </li>
  97. </ul></td>
  98. </tr></table>
  99. <h2 id="F">F</h2>
  100. <table style="width: 100%" class="indextable genindextable"><tr>
  101. <td style="width: 33%; vertical-align: top;"><ul>
  102. <li><a href="pygraph.utils.html#pygraph.utils.utils.floydTransformation">floydTransformation() (in module pygraph.utils.utils)</a>
  103. </li>
  104. </ul></td>
  105. <td style="width: 33%; vertical-align: top;"><ul>
  106. <li><a href="pygraph.utils.html#pygraph.utils.logger2file.Logger.flush">flush() (pygraph.utils.logger2file.Logger method)</a>
  107. </li>
  108. </ul></td>
  109. </tr></table>
  110. <h2 id="G">G</h2>
  111. <table style="width: 100%" class="indextable genindextable"><tr>
  112. <td style="width: 33%; vertical-align: top;"><ul>
  113. <li><a href="pygraph.utils.html#pygraph.utils.kernels.gaussiankernel">gaussiankernel() (in module pygraph.utils.kernels)</a>
  114. </li>
  115. <li><a href="pygraph.utils.html#pygraph.utils.graphdataset.get_dataset_attributes">get_dataset_attributes() (in module pygraph.utils.graphdataset)</a>
  116. </li>
  117. <li><a href="pygraph.utils.html#pygraph.utils.utils.get_edge_labels">get_edge_labels() (in module pygraph.utils.utils)</a>
  118. </li>
  119. <li><a href="pygraph.utils.html#pygraph.utils.utils.get_node_labels">get_node_labels() (in module pygraph.utils.utils)</a>
  120. </li>
  121. </ul></td>
  122. <td style="width: 33%; vertical-align: top;"><ul>
  123. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.getNode">getNode() (pygraph.utils.trie.Trie method)</a>
  124. </li>
  125. <li><a href="pygraph.utils.html#pygraph.utils.utils.getSPGraph">getSPGraph() (in module pygraph.utils.utils)</a>
  126. </li>
  127. <li><a href="pygraph.utils.html#pygraph.utils.utils.getSPLengths">getSPLengths() (in module pygraph.utils.utils)</a>
  128. </li>
  129. <li><a href="pygraph.utils.html#pygraph.utils.utils.graph_deepcopy">graph_deepcopy() (in module pygraph.utils.utils)</a>
  130. </li>
  131. <li><a href="pygraph.utils.html#pygraph.utils.utils.graph_isIdentical">graph_isIdentical() (in module pygraph.utils.utils)</a>
  132. </li>
  133. </ul></td>
  134. </tr></table>
  135. <h2 id="I">I</h2>
  136. <table style="width: 100%" class="indextable genindextable"><tr>
  137. <td style="width: 33%; vertical-align: top;"><ul>
  138. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.insertWord">insertWord() (pygraph.utils.trie.Trie method)</a>
  139. </li>
  140. </ul></td>
  141. <td style="width: 33%; vertical-align: top;"><ul>
  142. <li><a href="pygraph.utils.html#pygraph.utils.isNotebook.isNotebook">isNotebook() (in module pygraph.utils.isNotebook)</a>
  143. </li>
  144. </ul></td>
  145. </tr></table>
  146. <h2 id="K">K</h2>
  147. <table style="width: 100%" class="indextable genindextable"><tr>
  148. <td style="width: 33%; vertical-align: top;"><ul>
  149. <li><a href="pygraph.utils.html#pygraph.utils.kernels.kernelproduct">kernelproduct() (in module pygraph.utils.kernels)</a>
  150. </li>
  151. </ul></td>
  152. <td style="width: 33%; vertical-align: top;"><ul>
  153. <li><a href="pygraph.utils.html#pygraph.utils.kernels.kernelsum">kernelsum() (in module pygraph.utils.kernels)</a>
  154. </li>
  155. </ul></td>
  156. </tr></table>
  157. <h2 id="L">L</h2>
  158. <table style="width: 100%" class="indextable genindextable"><tr>
  159. <td style="width: 33%; vertical-align: top;"><ul>
  160. <li><a href="pygraph.utils.html#pygraph.utils.kernels.linearkernel">linearkernel() (in module pygraph.utils.kernels)</a>
  161. </li>
  162. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.load_from_json">load_from_json() (pygraph.utils.trie.Trie method)</a>
  163. </li>
  164. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.load_from_pickle">load_from_pickle() (pygraph.utils.trie.Trie method)</a>
  165. </li>
  166. <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadCT">loadCT() (in module pygraph.utils.graphfiles)</a>
  167. </li>
  168. <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadDataset">loadDataset() (in module pygraph.utils.graphfiles)</a>
  169. </li>
  170. <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadFromDS">loadFromDS() (in module pygraph.utils.graphfiles)</a>
  171. </li>
  172. </ul></td>
  173. <td style="width: 33%; vertical-align: top;"><ul>
  174. <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadFromXML">loadFromXML() (in module pygraph.utils.graphfiles)</a>
  175. </li>
  176. <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadGXL">loadGXL() (in module pygraph.utils.graphfiles)</a>
  177. </li>
  178. <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadMAT">loadMAT() (in module pygraph.utils.graphfiles)</a>
  179. </li>
  180. <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadSDF">loadSDF() (in module pygraph.utils.graphfiles)</a>
  181. </li>
  182. <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadTXT">loadTXT() (in module pygraph.utils.graphfiles)</a>
  183. </li>
  184. <li><a href="pygraph.utils.html#pygraph.utils.logger2file.Logger">Logger (class in pygraph.utils.logger2file)</a>
  185. </li>
  186. </ul></td>
  187. </tr></table>
  188. <h2 id="M">M</h2>
  189. <table style="width: 100%" class="indextable genindextable"><tr>
  190. <td style="width: 33%; vertical-align: top;"><ul>
  191. <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.model_selection_for_precomputed_kernel">model_selection_for_precomputed_kernel() (in module pygraph.utils.model_selection_precomputed)</a>
  192. </li>
  193. </ul></td>
  194. </tr></table>
  195. <h2 id="P">P</h2>
  196. <table style="width: 100%" class="indextable genindextable"><tr>
  197. <td style="width: 33%; vertical-align: top;"><ul>
  198. <li><a href="pygraph.utils.html#pygraph.utils.parallel.parallel_gm">parallel_gm() (in module pygraph.utils.parallel)</a>
  199. </li>
  200. <li><a href="pygraph.utils.html#pygraph.utils.parallel.parallel_me">parallel_me() (in module pygraph.utils.parallel)</a>
  201. </li>
  202. <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.parallel_trial_do">parallel_trial_do() (in module pygraph.utils.model_selection_precomputed)</a>
  203. </li>
  204. <li><a href="pygraph.utils.html#pygraph.utils.kernels.polynomialkernel">polynomialkernel() (in module pygraph.utils.kernels)</a>
  205. </li>
  206. <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.printResultsInTable">printResultsInTable() (in module pygraph.utils.model_selection_precomputed)</a>
  207. </li>
  208. <li><a href="pygraph.html#module-pygraph">pygraph (module)</a>
  209. </li>
  210. <li><a href="pygraph.utils.html#module-pygraph.utils">pygraph.utils (module)</a>
  211. </li>
  212. <li><a href="pygraph.utils.html#module-pygraph.utils.graphdataset">pygraph.utils.graphdataset (module)</a>
  213. </li>
  214. </ul></td>
  215. <td style="width: 33%; vertical-align: top;"><ul>
  216. <li><a href="pygraph.utils.html#module-pygraph.utils.graphfiles">pygraph.utils.graphfiles (module)</a>
  217. </li>
  218. <li><a href="pygraph.utils.html#module-pygraph.utils.isNotebook">pygraph.utils.isNotebook (module)</a>
  219. </li>
  220. <li><a href="pygraph.utils.html#module-pygraph.utils.kernels">pygraph.utils.kernels (module)</a>
  221. </li>
  222. <li><a href="pygraph.utils.html#module-pygraph.utils.logger2file">pygraph.utils.logger2file (module)</a>
  223. </li>
  224. <li><a href="pygraph.utils.html#module-pygraph.utils.model_selection_precomputed">pygraph.utils.model_selection_precomputed (module)</a>
  225. </li>
  226. <li><a href="pygraph.utils.html#module-pygraph.utils.parallel">pygraph.utils.parallel (module)</a>
  227. </li>
  228. <li><a href="pygraph.utils.html#module-pygraph.utils.trie">pygraph.utils.trie (module)</a>
  229. </li>
  230. <li><a href="pygraph.utils.html#module-pygraph.utils.utils">pygraph.utils.utils (module)</a>
  231. </li>
  232. </ul></td>
  233. </tr></table>
  234. <h2 id="R">R</h2>
  235. <table style="width: 100%" class="indextable genindextable"><tr>
  236. <td style="width: 33%; vertical-align: top;"><ul>
  237. <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.read_gram_matrices_from_file">read_gram_matrices_from_file() (in module pygraph.utils.model_selection_precomputed)</a>
  238. </li>
  239. </ul></td>
  240. </tr></table>
  241. <h2 id="S">S</h2>
  242. <table style="width: 100%" class="indextable genindextable"><tr>
  243. <td style="width: 33%; vertical-align: top;"><ul>
  244. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.save_to_json">save_to_json() (pygraph.utils.trie.Trie method)</a>
  245. </li>
  246. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.save_to_pickle">save_to_pickle() (pygraph.utils.trie.Trie method)</a>
  247. </li>
  248. <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.saveDataset">saveDataset() (in module pygraph.utils.graphfiles)</a>
  249. </li>
  250. </ul></td>
  251. <td style="width: 33%; vertical-align: top;"><ul>
  252. <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.saveGXL">saveGXL() (in module pygraph.utils.graphfiles)</a>
  253. </li>
  254. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.searchWord">searchWord() (pygraph.utils.trie.Trie method)</a>
  255. </li>
  256. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.searchWordPrefix">searchWordPrefix() (pygraph.utils.trie.Trie method)</a>
  257. </li>
  258. </ul></td>
  259. </tr></table>
  260. <h2 id="T">T</h2>
  261. <table style="width: 100%" class="indextable genindextable"><tr>
  262. <td style="width: 33%; vertical-align: top;"><ul>
  263. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.to_json">to_json() (pygraph.utils.trie.Trie method)</a>
  264. </li>
  265. </ul></td>
  266. <td style="width: 33%; vertical-align: top;"><ul>
  267. <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.trial_do">trial_do() (in module pygraph.utils.model_selection_precomputed)</a>
  268. </li>
  269. <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie">Trie (class in pygraph.utils.trie)</a>
  270. </li>
  271. </ul></td>
  272. </tr></table>
  273. <h2 id="U">U</h2>
  274. <table style="width: 100%" class="indextable genindextable"><tr>
  275. <td style="width: 33%; vertical-align: top;"><ul>
  276. <li><a href="pygraph.utils.html#pygraph.utils.utils.untotterTransformation">untotterTransformation() (in module pygraph.utils.utils)</a>
  277. </li>
  278. </ul></td>
  279. </tr></table>
  280. <h2 id="W">W</h2>
  281. <table style="width: 100%" class="indextable genindextable"><tr>
  282. <td style="width: 33%; vertical-align: top;"><ul>
  283. <li><a href="pygraph.utils.html#pygraph.utils.logger2file.Logger.write">write() (pygraph.utils.logger2file.Logger method)</a>
  284. </li>
  285. </ul></td>
  286. </tr></table>
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A Python package for graph kernels, graph edit distances and graph pre-image problem.