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v0.2.x
jajupmochi 4 years ago
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@@ -65,10 +65,10 @@ The docs of the library can be found [here](https://graphkit-learn.readthedocs.i
### 1 List of graph kernels ### 1 List of graph kernels


* Based on walks * Based on walks
* [The common walk kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/common_walk.py) [1]
* [The common walk kernel](gklearn/kernels/common_walk.py) [1]
* Exponential * Exponential
* Geometric * Geometric
* [The marginalized kenrel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/marginalized.py)
* [The marginalized kenrel](gklearn/kernels/marginalized.py)
* With tottering [2] * With tottering [2]
* Without tottering [7] * Without tottering [7]
* [The generalized random walk kernel](gklearn/kernels/random_walk.py) [3] * [The generalized random walk kernel](gklearn/kernels/random_walk.py) [3]
@@ -77,15 +77,15 @@ The docs of the library can be found [here](https://graphkit-learn.readthedocs.i
* Fixed-point iterations * Fixed-point iterations
* [Spectral decomposition](gklearn/kernels/spectral_decomposition.py) * [Spectral decomposition](gklearn/kernels/spectral_decomposition.py)
* Based on paths * Based on paths
* [The shortest path kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/shortest_path.py) [4]
* [The structural shortest path kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/structural_sp.py) [5]
* [The path kernel up to length h](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/path_up_to_h.py) [6]
* [The shortest path kernel](gklearn/kernels/shortest_path.py) [4]
* [The structural shortest path kernel](gklearn/kernels/structural_sp.py) [5]
* [The path kernel up to length h](gklearn/kernels/path_up_to_h.py) [6]
* The Tanimoto kernel * The Tanimoto kernel
* The MinMax kernel * The MinMax kernel
* Non-linear kernels * Non-linear kernels
* [The treelet kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/treelet.py) [10]
* [Weisfeiler-Lehman kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/weisfeiler_lehman.py) [11]
* [Subtree](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/weisfeiler_lehman.py#L479)
* [The treelet kernel](gklearn/kernels/treelet.py) [10]
* [Weisfeiler-Lehman kernel](gklearn/kernels/weisfeiler_lehman.py) [11]
* [Subtree](gklearn/kernels/weisfeiler_lehman.py#L479)


A demo of computing graph kernels can be found on [Google Colab](https://colab.research.google.com/drive/17Q2QCl9CAtDweGF8LiWnWoN2laeJqT0u?usp=sharing) and in the [`examples`](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/examples/compute_graph_kernel.py) folder. A demo of computing graph kernels can be found on [Google Colab](https://colab.research.google.com/drive/17Q2QCl9CAtDweGF8LiWnWoN2laeJqT0u?usp=sharing) and in the [`examples`](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/examples/compute_graph_kernel.py) folder.


@@ -97,7 +97,7 @@ A demo of generating graph preimages can be found on [Google Colab](https://cola


### 4 Interface to `GEDLIB` ### 4 Interface to `GEDLIB`


[`GEDLIB`](https://github.com/dbblumenthal/gedlib) is an easily extensible C++ library for (suboptimally) computing the graph edit distance between attributed graphs. [A Python interface](https://github.com/jajupmochi/graphkit-learn/tree/master/gklearn/gedlib) for `GEDLIB` is integrated in this library, based on [`gedlibpy`](https://github.com/Ryurin/gedlibpy) library.
[`GEDLIB`](https://github.com/dbblumenthal/gedlib) is an easily extensible C++ library for (suboptimally) computing the graph edit distance between attributed graphs. [A Python interface](gklearn/gedlib) for `GEDLIB` is integrated in this library, based on [`gedlibpy`](https://github.com/Ryurin/gedlibpy) library.


### 5 Computation optimization methods ### 5 Computation optimization methods




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