[Exp] Update exceptions in fcsp exps.

gklearn/experiments/thesis/graph_kernels/fcsp/run_jobs_compare_fcsp.py

@@ -10,7 +10,7 @@ import os
 import re
 
 
-OUT_TIME_LIST = [('ShortestPath', 'ENZYMES', 'False'),
+OUT_TIME_LIST = set({('ShortestPath', 'ENZYMES', 'False'),
 				 ('StructuralSP', 'ENZYMES', 'True'),
 				 ('StructuralSP', 'ENZYMES', 'False'),
 				 ('StructuralSP', 'AIDS', 'False'),
@@ -26,20 +26,28 @@ OUT_TIME_LIST = [('ShortestPath', 'ENZYMES', 'False'),
 				 ('ShortestPath', 'COX2', 'False'),
 				 ('StructuralSP', 'COX2', 'False'),
 				 ('ShortestPath', 'DHFR', 'False'),
-				 ]
-
-OUT_MEM_LIST = [('StructuralSP', 'PROTEINS', 'True'),
+				 ('StructuralSP', 'DHFR', 'False'),
+				 ('StructuralSP', 'OHSU', 'True'),
+				 ('StructuralSP', 'OHSU', 'False'),
+				 ('ShortestPath', 'SYNTHETICnew', 'False'),
+				 ('StructuralSP', 'SYNTHETICnew', 'True'),
+				 ('StructuralSP', 'SYNTHETICnew', 'False'),
+				 ('ShortestPath', 'Synthie', 'False'),
+				 ('StructuralSP', 'Synthie', 'True'),
+				 })
+
+OUT_MEM_LIST = set({('StructuralSP', 'PROTEINS', 'True'),
 				('StructuralSP', 'PROTEINS', 'False'),
 				('StructuralSP', 'PROTEINS_full', 'True'),
 				('StructuralSP', 'PROTEINS_full', 'False'),
 				('ShortestPath', 'REDDIT-BINARY', 'True'),
-				]
+				})
 
-MISS_LABEL_LIST = [('StructuralSP', 'GREC', 'True'),
+MISS_LABEL_LIST = set({('StructuralSP', 'GREC', 'True'),
 				   ('StructuralSP', 'GREC', 'False'),
 				   ('StructuralSP', 'Web', 'True'),
 				   ('StructuralSP', 'Web', 'False'),
-				   ]
+				   })
 
 
 def get_job_script(kernel, dataset, fcsp):

gklearn/experiments/thesis/graph_kernels/fcsp/run_jobs_compare_fcsp_space.py

@@ -14,10 +14,14 @@ import pickle
 OUT_TIME_LIST = []
 
 
-OUT_MEM_LIST = [('ShortestPath', 'REDDIT-BINARY', 'True'),
+OUT_MEM_LIST = set({('ShortestPath', 'REDDIT-BINARY', 'True'),
 				('ShortestPath', 'REDDIT-BINARY', 'False'),
 				('ShortestPath', 'DD', 'True'),
 				('ShortestPath', 'DD', 'False'),
+				('ShortestPath', 'COLORS-3', 'True'),
+				('ShortestPath', 'COLORS-3', 'False'),
+				('StructuralSP', 'COLORS-3', 'True'),
+				('StructuralSP', 'COLORS-3', 'False'),
 				('ShortestPath', 'MCF-7', 'True'),
 				('ShortestPath', 'MCF-7', 'False'),
 				('StructuralSP', 'MCF-7', 'True'),
@@ -35,7 +39,13 @@ OUT_MEM_LIST = [('ShortestPath', 'REDDIT-BINARY', 'True'),
 				('StructuralSP', 'MOLT-4H', 'True'),
 				('StructuralSP', 'MOLT-4H', 'False'),
 				('ShortestPath', 'P388', 'True'),
+				('ShortestPath', 'P388', 'False'),
+				('StructuralSP', 'P388', 'True'),
+				('StructuralSP', 'P388', 'False'),
 				('ShortestPath', 'P388H', 'True'),
+				('ShortestPath', 'P388H', 'False'),
+				('StructuralSP', 'P388H', 'True'),
+				('StructuralSP', 'P388H', 'False'),
 				('ShortestPath', 'NCI-H23', 'True'),
 				('ShortestPath', 'NCI-H23', 'False'),
 				('StructuralSP', 'NCI-H23', 'True'),
@@ -48,7 +58,9 @@ OUT_MEM_LIST = [('ShortestPath', 'REDDIT-BINARY', 'True'),
 				('ShortestPath', 'OVCAR-8', 'False'),
 				('StructuralSP', 'OVCAR-8', 'True'),
 				('StructuralSP', 'OVCAR-8', 'False'),
+				('ShortestPath', 'OVCAR-8H', 'True'),
 				('ShortestPath', 'OVCAR-8H', 'False'),
+				('StructuralSP', 'OVCAR-8H', 'True'),
 				('StructuralSP', 'OVCAR-8H', 'False'),
 				('ShortestPath', 'SN12C', 'True'),
 				('ShortestPath', 'SN12C', 'False'),
@@ -60,21 +72,30 @@ OUT_MEM_LIST = [('ShortestPath', 'REDDIT-BINARY', 'True'),
 				('ShortestPath', 'SF-295', 'False'),
 				('StructuralSP', 'SF-295', 'True'),
 				('StructuralSP', 'SF-295', 'False'),
+				('ShortestPath', 'SF-295H', 'True'),
 				('ShortestPath', 'SF-295H', 'False'),
+				('StructuralSP', 'SF-295H', 'True'),
 				('StructuralSP', 'SF-295H', 'False'),
 				('ShortestPath', 'SW-620', 'True'),
 				('ShortestPath', 'SW-620', 'False'),
 				('StructuralSP', 'SW-620', 'True'),
 				('StructuralSP', 'SW-620', 'False'),
+				('ShortestPath', 'SW-620H', 'True'),
 				('ShortestPath', 'SW-620H', 'False'),
+				('StructuralSP', 'SW-620H', 'True'),
 				('StructuralSP', 'SW-620H', 'False'),
+				('ShortestPath', 'TRIANGLES', 'True'),
 				('ShortestPath', 'TRIANGLES', 'False'),
+				('StructuralSP', 'TRIANGLES', 'True'),
 				('StructuralSP', 'TRIANGLES', 'False'),
 				('ShortestPath', 'Yeast', 'True'),
 				('ShortestPath', 'Yeast', 'False'),
 				('StructuralSP', 'Yeast', 'True'),
 				('StructuralSP', 'Yeast', 'False'),
 				('ShortestPath', 'YeastH', 'True'),
+				('ShortestPath', 'YeastH', 'False'),
+				('StructuralSP', 'YeastH', 'True'),
+				('StructuralSP', 'YeastH', 'False'),
 				('ShortestPath', 'FRANKENSTEIN', 'True'),
 				('ShortestPath', 'FRANKENSTEIN', 'False'),
 				('StructuralSP', 'FRANKENSTEIN', 'True'),
@@ -97,22 +118,31 @@ OUT_MEM_LIST = [('ShortestPath', 'REDDIT-BINARY', 'True'),
 				('ShortestPath', 'PC-3H', 'False'),
 				('StructuralSP', 'PC-3H', 'True'),
 				('StructuralSP', 'PC-3H', 'False'),
+				('ShortestPath', 'DBLP_v1', 'True'),
 				('ShortestPath', 'DBLP_v1', 'False'),
 				('StructuralSP', 'DBLP_v1', 'True'),
+				('ShortestPath', 'COLLAB', 'True'),
+				('ShortestPath', 'COLLAB', 'False'),
+				('StructuralSP', 'COLLAB', 'True'),
+				('StructuralSP', 'COLLAB', 'False'),
 				('ShortestPath', 'REDDIT-BINARY', 'False'),
+				('StructuralSP', 'REDDIT-MULTI-5K', 'True'),
+				('StructuralSP', 'REDDIT-MULTI-5K', 'False'),
+				('ShortestPath', 'REDDIT-MULTI-12K', 'True'),
 				('ShortestPath', 'REDDIT-MULTI-12K', 'False'),
+				('StructuralSP', 'REDDIT-MULTI-12K', 'True'),
 				('StructuralSP', 'REDDIT-MULTI-12K', 'False'),
 				('ShortestPath', 'TWITTER-Real-Graph-Partial', 'True'),
 				('ShortestPath', 'TWITTER-Real-Graph-Partial', 'False'),
 				('StructuralSP', 'TWITTER-Real-Graph-Partial', 'True'),
 				('StructuralSP', 'TWITTER-Real-Graph-Partial', 'False'),
-				]
+				})
 
-MISS_LABEL_LIST = [('StructuralSP', 'GREC', 'True'),
+MISS_LABEL_LIST = set({('StructuralSP', 'GREC', 'True'),
 				   ('StructuralSP', 'GREC', 'False'),
 				   ('StructuralSP', 'Web', 'True'),
 				   ('StructuralSP', 'Web', 'False'),
-				   ]
+				   })
 
 
 def get_job_script(kernel, dataset, fcsp):