From 424fe5fa322217407ecc68bbda8ad4f7be56c7eb Mon Sep 17 00:00:00 2001 From: jajupmochi Date: Fri, 25 Sep 2020 11:29:37 +0200 Subject: [PATCH] Update README.md --- README.md | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/README.md b/README.md index 085084d..c9a0ca8 100644 --- a/README.md +++ b/README.md @@ -62,20 +62,20 @@ The docs of the library can be found [here](https://graphkit-learn.readthedocs.i ## Main contents -### List of graph kernels +### 1 List of graph kernels * Based on walks - * The common walk kernel [1] + * [The common walk kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/common_walk.py) [1] * Exponential * Geometric * [The marginalized kenrel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/marginalized.py) * With tottering [2] * Without tottering [7] - * The generalized random walk kernel [3] - * Sylvester equation + * [The generalized random walk kernel](gklearn/kernels/random_walk.py) [3] + * [Sylvester equation](gklearn/kernels/sylvester_equation.py) * Conjugate gradient * Fixed-point iterations - * Spectral decomposition + * [Spectral decomposition](gklearn/kernels/spectral_decomposition.py) * Based on paths * [The shortest path kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/shortest_path.py) [4] * [The structural shortest path kernel](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/kernels/structural_sp.py) [5] @@ -89,17 +89,17 @@ The docs of the library can be found [here](https://graphkit-learn.readthedocs.i A demo of computing graph kernels can be found on [Google Colab](https://colab.research.google.com/drive/17Q2QCl9CAtDweGF8LiWnWoN2laeJqT0u?usp=sharing) and in the [`examples`](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/examples/compute_graph_kernel.py) folder. -### Graph Edit Distances +### 2 Graph Edit Distances -### Graph preimage methods +### 3 Graph preimage methods A demo of generating graph preimages can be found on [Google Colab](https://colab.research.google.com/drive/1PIDvHOcmiLEQ5Np3bgBDdu0kLOquOMQK?usp=sharing) and in the [`examples`](https://github.com/jajupmochi/graphkit-learn/blob/master/gklearn/examples/median_preimege_generator.py) folder. -### Interface to `GEDLIB` +### 4 Interface to `GEDLIB` [`GEDLIB`](https://github.com/dbblumenthal/gedlib) is an easily extensible C++ library for (suboptimally) computing the graph edit distance between attributed graphs. [A Python interface](https://github.com/jajupmochi/graphkit-learn/tree/master/gklearn/gedlib) for `GEDLIB` is integrated in this library, based on [`gedlibpy`](https://github.com/Ryurin/gedlibpy) library. -### Computation optimization methods +### 5 Computation optimization methods * Python’s `multiprocessing.Pool` module is applied to perform **parallelization** on the computations of all kernels as well as the model selection. * **The Fast Computation of Shortest Path Kernel (FCSP) method** [8] is implemented in *the random walk kernel*, *the shortest path kernel*, as well as *the structural shortest path kernel* where FCSP is applied on both vertex and edge kernels.