linlin
8b853895fa
Merge pull request #48 from jajupmochi/v0.2.x
V0.2.x
3 years ago
jajupmochi
45747641df
[CI] Fix travis badge link.
3 years ago
linlin
0af57092a3
Update README.md
3 years ago
The Gitter Badger
375cc34243
Add Gitter badge
3 years ago
jajupmochi
92fd38c4d6
[CI] Migrate from travis.org to travis.com.
4 years ago
jajupmochi
2e0105c488
[Fix] Typos in README.md.
4 years ago
jajupmochi
b72fb5db21
[Doc] Update citation.
4 years ago
jajupmochi
993e8f591d
Fix bugs when installing slycot.
4 years ago
jajupmochi
c55003d9a2
Add a requirement: slycot.
4 years ago
jajupmochi
5eea854d3d
Add CHANGELOG.md.
4 years ago
jajupmochi
5303897fb5
Add exps.
4 years ago
jajupmochi
1741804ea8
Remove support for Python 3.5.
4 years ago
jajupmochi
5420995d2d
Update README and requirements.
4 years ago
jajupmochi
1b7d4adace
Update README.md.
4 years ago
jajupmochi
424fe5fa32
Update README.md
4 years ago
jajupmochi
293ed9efae
Fix bugs and add xps.
4 years ago
jajupmochi
d39d0a0aec
Update.
5 years ago
jajupmochi
d040440081
Update README.md.
5 years ago
jajupmochi
1191009381
Update requirements.
5 years ago
jajupmochi
e4adfbc7db
Add AppVeyor CI for Windows platforms.
5 years ago
jajupmochi
b4e76e08d4
Update README.
5 years ago
jajupmochi
9fc8fbfeb9
add trim_dataset() method to class Dataset.
5 years ago
jajupmochi
7a16cfb9cf
update versions of requirements in README.md.
5 years ago
jajupmochi
5dae69b878
1. fix bugs.
2. update README.md.
3. update preimage module, class Dataset.
4. update requirements.
5. add helper function to compute Gram matrix for each class.
5 years ago
jajupmochi
8804465536
1. update termination criterion of iteration in class MedianPreimageGenerator.
2. add helper function generate_median_preimage_by_class in gklearn.preimage.utils.
5 years ago
jajupmochi
3faed9066b
update docs conf.
5 years ago
jajupmochi
d1d0cdfc3b
add PyPI version badge.
5 years ago
jajupmochi
dcccc4e759
update README.md
5 years ago
jajupmochi
d6b252a83e
rename library.
5 years ago
jajupmochi
c38dc97438
add Readthedocs badge.
5 years ago
jajupmochi
f7fcc36d83
add Codecov badge.
5 years ago
jajupmochi
eeebdf9f02
add Travis CI badge in README.
5 years ago
jajupmochi
73b2b7d279
1. add wl subtree kernel.
2. update datasets.
6 years ago
jajupmochi
6222e1984f
update README
6 years ago
linlin
d845b8ccd7
Update README.md
6 years ago
jajupmochi
347b44cdd9
A lot of things changed...
6 years ago
jajupmochi
68772ba4b4
1. [IMPORTANT] correct an error in dataset split section in function cross_validation_pre_computed. DON NOT use previous versions. They are all wrong.
2. save gram matrices and relative data when using function cross_validation_pre_computed, before cross validation step, in case that something goes wrong with CV. Parameter read_gm_from_file can be used to choose whether to read gram matrices from file.
3. add some test code to check if a gram matrix is symmetric and positive semi-definite.
6 years ago
jajupmochi
22a1f1e8d8
1. add parallel computing scheme to spkernel and model_selection_precomputed.
2. modify model_selection_precomputed so that all results are written into memory and then to a file at last section of code, in case that on cpu/disk seperated systems the IO takes too much time.
3. correct utils.floyd_warshall_numpy function. DONNOT use the last version.
7 years ago
jajupmochi
2db913b7eb
MOD extend marginalized kernel, remove tottering.
MOD modify tree pattern kernel, remove tottering.
MOD save output in function model_selection_precpmputed.
7 years ago
jajupmochi
15b6a97053
modifié : README.md
modifié : notebooks/run_treepatternkernel.ipynb
modifié : notebooks/run_untilnwalkkernel.ipynb
7 years ago
jajupmochi
338f8ba326
modifié : README.md
modifié : notebooks/run_cyclicpatternkernel.ipynb
modifié : notebooks/run_marginalizedkernel_acyclic.ipynb
modifié : notebooks/run_pathkernel_acyclic.ipynb
modifié : notebooks/run_spkernel_acyclic.ipynb
modifié : notebooks/run_treeletkernel_acyclic.ipynb
modifié : notebooks/run_treepatternkernel.ipynb
modifié : notebooks/run_untildpathkernel_acyclic.ipynb
nouveau fichier : notebooks/run_untilnwalkkernel.ipynb
modifié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb
modifié : pygraph/kernels/treePatternKernel.py
modifié : pygraph/kernels/untildPathKernel.py
nouveau fichier : pygraph/kernels/untilnWalkKernel.py
nouveau fichier : pygraph/utils/model_selection_precomputed.py
modifié : pygraph/utils/utils.py
7 years ago
jajupmochi
0d82ebe6b8
copié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb -> .ipynb_checkpoints/run_weisfeilerLehmankernel_acyclic-checkpoint.ipynb
modifié : README.md
nouveau fichier : notebooks/run_cyclicpatternkernel.ipynb
modifié : notebooks/run_marginalizedkernel_acyclic.ipynb
modifié : notebooks/run_pathkernel_acyclic.ipynb
modifié : notebooks/run_spkernel_acyclic.ipynb
modifié : notebooks/run_treeletkernel_acyclic.ipynb
nouveau fichier : notebooks/run_treepatternkernel.ipynb
modifié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb
nouveau fichier : pygraph/kernels/cyclicPatternKernel.py
modifié : pygraph/kernels/deltaKernel.py
modifié : pygraph/kernels/pathKernel.py
modifié : pygraph/kernels/results.md
modifié : pygraph/kernels/spKernel.py
nouveau fichier : pygraph/kernels/treePatternKernel.py
modifié : pygraph/kernels/treeletKernel.py
modifié : pygraph/kernels/untildPathKernel.py
modifié : pygraph/kernels/weisfeilerLehmanKernel.py
modifié : pygraph/utils/graphfiles.py
modifié : pygraph/utils/utils.py
nouveau fichier : run_cyclic.py
7 years ago
jajupmochi
24eae65154
* ADD *path kernel up to depth d* and its result on dataset Asyclic.
* MOD treelet kernel, retrieve canonkeys of all graphs before calculate kernels, wildly speed it up.
7 years ago
jajupmochi
713edf2794
ADD comments to code of treelet kernel.
7 years ago
jajupmochi
5d0d9e350b
* ADD *treelet kernel* and its result on dataset Asyclic. - linlin
* MOD the way to calculate WL subtree kernel, correct its results. - linlin
* ADD *kernel_train_test* and *split_train_test* to wrap training and testing process. - linlin
* MOD readme.md file, add detailed results of each kernel. - linlin
7 years ago
jajupmochi
460e846a8f
* ADD calculation of the time spend to acquire kernel matrices for each kernel. - linlin
* MOD floydTransformation function, calculate shortest paths taking into consideration user-defined edge weight. - linlin
* MOD implementation of nodes and edges attributes genericity for all kernels. - linlin
* ADD detailed results file results.md. - linlin
* MOD Weisfeiler-Lehman subtree kernel and the test code. - linlin
7 years ago
jajupmochi
1cac6d23af
* ADD Weisfeiler-Lehman subtree kernel and its result on dataset Asyclic.
7 years ago
jajupmochi
0184a2a06b
* ADD mean average path kernel and its result on dataset Asyclic. - linlin
* ADD delta kernel. - linlin
* MOD reconstruction the code of marginalized kernel. - linlin
7 years ago
jajupmochi
5fa8e5aeea
initial
7 years ago
linlin
f7fad1a821
Initial commit
7 years ago