graphkit-learn

Commit Graph

Author	SHA1	Message	Date
jajupmochi	06b32cdf8a	1. apply multiprocessing.Pool.imap_unordered method instead of the map method, so that tqdm could be applied to track progress. 2. apply part of the Fast Computation of Shortest Path Kernel (FCSP) to speed up the sp kernel.	7 years ago
jajupmochi	22a1f1e8d8	1. add parallel computing scheme to spkernel and model_selection_precomputed. 2. modify model_selection_precomputed so that all results are written into memory and then to a file at last section of code, in case that on cpu/disk seperated systems the IO takes too much time. 3. correct utils.floyd_warshall_numpy function. DONNOT use the last version.	7 years ago
jajupmochi	6aac5b2981	1. add Sylvester Equation Methods for the generalized random walk kernel. 2. correct an error in the common walk kernel. DON NOT use the old one. 3. improve the method to construct fully-labeled direct product graphs, much faster for sparse graphs.	7 years ago
jajupmochi	efca08fb30	1. upgrate spkernel, now supporting symbolic and non-symbolic node labels, directed and undirected graphs, and allowing user-defined node kernels. 2. model_selection_precomputed can now save all results as human readable text. 3. modify pygraph.utils.utils.floydTransformation and pygraph.utils.graphdataset.get_dataset_attributes.	7 years ago
jajupmochi	4fa6f373f3	Merge branch 'ljia' of https://git.litislab.fr/bgauzere/py-graph into ljia	7 years ago
jajupmochi	bc93c0f80b	I am dead...	7 years ago
jajupmochi	ff2201d42b	Merge branch 'ljia' of https://github.com/jajupmochi/py-graph into ljia	7 years ago
jajupmochi	f684f51ad1	delete useless results.	7 years ago
jajupmochi	1ee3ee0cba	Merge branch 'ljia' of https://github.com/jajupmochi/py-graph into ljia	7 years ago
jajupmochi	3fd31d48ec	delete useless results files.	7 years ago
jajupmochi	503187dc3f	delete useless results files.	7 years ago
jajupmochi	8e4f0aba58	Merge branch 'ljia' of https://git.litislab.fr/bgauzere/py-graph into ljia	7 years ago
jajupmochi	609a7a0124	Merge branch 'ljia' of https://git.litislab.fr/bgauzere/py-graph into ljia	7 years ago
jajupmochi	38d66d8ae3	Plus de choses sont changées...	7 years ago
jajupmochi	b0f6470c35	Plus de choses sont changées...	7 years ago
jajupmochi	2db913b7eb	MOD extend marginalized kernel, remove tottering. MOD modify tree pattern kernel, remove tottering. MOD save output in function model_selection_precpmputed.	7 years ago
jajupmochi	51f034a4a0	MOD extend marginalized kernel, remove tottering. MOD modify tree pattern kernel, remove tottering. MOD save output in function model_selection_precpmputed.	7 years ago
jajupmochi	c2cc1336dc	MOD extend marginalized kernel, remove tottering. MOD modify tree pattern kernel, remove tottering. MOD save output in function model_selection_precpmputed.	7 years ago
jajupmochi	c615605b08	MOD extend marginalized kernel, remove tottering. MOD modify tree pattern kernel, remove tottering. MOD save output in function model_selection_precpmputed.	7 years ago
jajupmochi	b683eb9e5e	remove unnecessary files.	7 years ago
jajupmochi	522ab84d1c	remove unnecessary files.	7 years ago
jajupmochi	15b6a97053	modifié : README.md modifié : notebooks/run_treepatternkernel.ipynb modifié : notebooks/run_untilnwalkkernel.ipynb	7 years ago
jajupmochi	521b91ff0f	modifié : README.md modifié : notebooks/run_treepatternkernel.ipynb modifié : notebooks/run_untilnwalkkernel.ipynb	7 years ago
jajupmochi	338f8ba326	modifié : README.md modifié : notebooks/run_cyclicpatternkernel.ipynb modifié : notebooks/run_marginalizedkernel_acyclic.ipynb modifié : notebooks/run_pathkernel_acyclic.ipynb modifié : notebooks/run_spkernel_acyclic.ipynb modifié : notebooks/run_treeletkernel_acyclic.ipynb modifié : notebooks/run_treepatternkernel.ipynb modifié : notebooks/run_untildpathkernel_acyclic.ipynb nouveau fichier : notebooks/run_untilnwalkkernel.ipynb modifié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb modifié : pygraph/kernels/treePatternKernel.py modifié : pygraph/kernels/untildPathKernel.py nouveau fichier : pygraph/kernels/untilnWalkKernel.py nouveau fichier : pygraph/utils/model_selection_precomputed.py modifié : pygraph/utils/utils.py	7 years ago
jajupmochi	4b7e8f5522	modifié : README.md modifié : notebooks/run_cyclicpatternkernel.ipynb modifié : notebooks/run_marginalizedkernel_acyclic.ipynb modifié : notebooks/run_pathkernel_acyclic.ipynb modifié : notebooks/run_spkernel_acyclic.ipynb modifié : notebooks/run_treeletkernel_acyclic.ipynb modifié : notebooks/run_treepatternkernel.ipynb modifié : notebooks/run_untildpathkernel_acyclic.ipynb nouveau fichier : notebooks/run_untilnwalkkernel.ipynb modifié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb modifié : pygraph/kernels/treePatternKernel.py modifié : pygraph/kernels/untildPathKernel.py nouveau fichier : pygraph/kernels/untilnWalkKernel.py nouveau fichier : pygraph/utils/model_selection_precomputed.py modifié : pygraph/utils/utils.py	7 years ago
jajupmochi	0d82ebe6b8	copié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb -> .ipynb_checkpoints/run_weisfeilerLehmankernel_acyclic-checkpoint.ipynb modifié : README.md nouveau fichier : notebooks/run_cyclicpatternkernel.ipynb modifié : notebooks/run_marginalizedkernel_acyclic.ipynb modifié : notebooks/run_pathkernel_acyclic.ipynb modifié : notebooks/run_spkernel_acyclic.ipynb modifié : notebooks/run_treeletkernel_acyclic.ipynb nouveau fichier : notebooks/run_treepatternkernel.ipynb modifié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb nouveau fichier : pygraph/kernels/cyclicPatternKernel.py modifié : pygraph/kernels/deltaKernel.py modifié : pygraph/kernels/pathKernel.py modifié : pygraph/kernels/results.md modifié : pygraph/kernels/spKernel.py nouveau fichier : pygraph/kernels/treePatternKernel.py modifié : pygraph/kernels/treeletKernel.py modifié : pygraph/kernels/untildPathKernel.py modifié : pygraph/kernels/weisfeilerLehmanKernel.py modifié : pygraph/utils/graphfiles.py modifié : pygraph/utils/utils.py nouveau fichier : run_cyclic.py	7 years ago
jajupmochi	122ba2ae06	copié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb -> .ipynb_checkpoints/run_weisfeilerLehmankernel_acyclic-checkpoint.ipynb modifié : README.md nouveau fichier : notebooks/run_cyclicpatternkernel.ipynb modifié : notebooks/run_marginalizedkernel_acyclic.ipynb modifié : notebooks/run_pathkernel_acyclic.ipynb modifié : notebooks/run_spkernel_acyclic.ipynb modifié : notebooks/run_treeletkernel_acyclic.ipynb nouveau fichier : notebooks/run_treepatternkernel.ipynb modifié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb nouveau fichier : pygraph/kernels/cyclicPatternKernel.py modifié : pygraph/kernels/deltaKernel.py modifié : pygraph/kernels/pathKernel.py modifié : pygraph/kernels/results.md modifié : pygraph/kernels/spKernel.py nouveau fichier : pygraph/kernels/treePatternKernel.py modifié : pygraph/kernels/treeletKernel.py modifié : pygraph/kernels/untildPathKernel.py modifié : pygraph/kernels/weisfeilerLehmanKernel.py modifié : pygraph/utils/graphfiles.py modifié : pygraph/utils/utils.py nouveau fichier : run_cyclic.py	7 years ago
jajupmochi	24eae65154	* ADD path kernel up to depth d and its result on dataset Asyclic. * MOD treelet kernel, retrieve canonkeys of all graphs before calculate kernels, wildly speed it up.	7 years ago
jajupmochi	58e7456f6b	* ADD path kernel up to depth d and its result on dataset Asyclic. * MOD treelet kernel, retrieve canonkeys of all graphs before calculate kernels, wildly speed it up.	7 years ago
jajupmochi	713edf2794	ADD comments to code of treelet kernel.	7 years ago
jajupmochi	8f6f78f6a6	ADD comments to code of treelet kernel.	7 years ago
jajupmochi	a719ac6859	* ADD treelet kernel and its result on dataset Asyclic. - linlin * MOD the way to calculate WL subtree kernel, correct its results. - linlin * ADD kernel_train_test and split_train_test to wrap training and testing process. - linlin * MOD readme.md file, add detailed results of each kernel. - linlin	7 years ago
jajupmochi	e7c5e82c29	* ADD treelet kernel and its result on dataset Asyclic. - linlin * MOD the way to calculate WL subtree kernel, correct its results. - linlin * ADD kernel_train_test and split_train_test to wrap training and testing process. - linlin * MOD readme.md file, add detailed results of each kernel. - linlin	7 years ago
jajupmochi	5d0d9e350b	* ADD treelet kernel and its result on dataset Asyclic. - linlin * MOD the way to calculate WL subtree kernel, correct its results. - linlin * ADD kernel_train_test and split_train_test to wrap training and testing process. - linlin * MOD readme.md file, add detailed results of each kernel. - linlin	7 years ago
jajupmochi	62a0d264d5	* ADD treelet kernel and its result on dataset Asyclic. - linlin * MOD the way to calculate WL subtree kernel, correct its results. - linlin * ADD kernel_train_test and split_train_test to wrap training and testing process. - linlin * MOD readme.md file, add detailed results of each kernel. - linlin	7 years ago
jajupmochi	460e846a8f	* ADD calculation of the time spend to acquire kernel matrices for each kernel. - linlin * MOD floydTransformation function, calculate shortest paths taking into consideration user-defined edge weight. - linlin * MOD implementation of nodes and edges attributes genericity for all kernels. - linlin * ADD detailed results file results.md. - linlin * MOD Weisfeiler-Lehman subtree kernel and the test code. - linlin	7 years ago
jajupmochi	7e2a15d62f	* ADD calculation of the time spend to acquire kernel matrices for each kernel. - linlin * MOD floydTransformation function, calculate shortest paths taking into consideration user-defined edge weight. - linlin * MOD implementation of nodes and edges attributes genericity for all kernels. - linlin * ADD detailed results file results.md. - linlin * MOD Weisfeiler-Lehman subtree kernel and the test code. - linlin	7 years ago
jajupmochi	6e7098004c	* MOD Implementation of attributes genericity for both gxl and ct functions	7 years ago
jajupmochi	323590eeff	* MOD Implementation of attributes genericity for both gxl and ct functions	7 years ago
jajupmochi	1cac6d23af	* ADD Weisfeiler-Lehman subtree kernel and its result on dataset Asyclic.	7 years ago
jajupmochi	4ede9698de	* ADD Weisfeiler-Lehman subtree kernel and its result on dataset Asyclic.	7 years ago
jajupmochi	0184a2a06b	* ADD mean average path kernel and its result on dataset Asyclic. - linlin * ADD delta kernel. - linlin * MOD reconstruction the code of marginalized kernel. - linlin	7 years ago
jajupmochi	2bd2325c8b	* ADD mean average path kernel and its result on dataset Asyclic. - linlin * ADD delta kernel. - linlin * MOD reconstruction the code of marginalized kernel. - linlin	7 years ago
jajupmochi	a74c201d52	change of file structure.	7 years ago
jajupmochi	c567c734bd	change of file structure.	7 years ago
jajupmochi	51911e8bc9	initial	7 years ago
jajupmochi	1f2d94d58c	initial	7 years ago
jajupmochi	8ef59310f9	Merge branch 'ljia' of https://git.litislab.fr/bgauzere/py-graph into ljia	7 years ago
jajupmochi	1dbe6630c8	Merge branch 'ljia' of https://git.litislab.fr/bgauzere/py-graph into ljia	7 years ago
jajupmochi	5fa8e5aeea	initial	7 years ago

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70 Commits (06b32cdf8ab4f9cad1db561b437bf1fcb8299a19) All Branches Search

70 Commits (06b32cdf8ab4f9cad1db561b437bf1fcb8299a19)

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