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70 Commits (1946d469643d618d9c381354f25933af2da2aed0)

Author SHA1 Message Date
  jajupmochi 1946d46964 [Feature] Allow to permutate nodes in graphs when using bipartite to estimate GED. This feature is implementated in the method in Python, which invokes GEDLIB in C++ by Cython. 3 years ago
  jajupmochi 42acfd0236 [Fix] Fix laplacian_kernel and cosine_kernel between pairs of numpy vectors. 3 years ago
  jajupmochi dd58f602ec [Feature] Add kronecker_delta_kernel function between a pair of numpy vectors. 3 years ago
  jajupmochi 7d3e929b36 [Feature] Add several new kernels between vectors. 3 years ago
  jajupmochi 4fd314d374 [Fix] Fixed the bug that gklearn.utils.kernels.gaussiankernel can not handle lists as inputs. 4 years ago
  jajupmochi 1800923c45 [API change] gklearn.utils.kernels.gaussiankernel function no longer transforms inputs to numpy.array of float values. This may be faster, but may cause some errors to the previous codes. 4 years ago
  jajupmochi 70a11dfd1b [Enhancement] gklearn.utils.normalize_gram_matrix function now raises an excepetion if the diagonal includes negative values.\n[Enhancement] gklearn.utils.get_graph_kernel_by_name function now accepts strings of kernel names the same as the keys of gklearn.kernels.GRAPH_KERNELS and supports more graph kernels. 4 years ago
  jajupmochi 6326e22abc Put deprecation warning of gklearn.utils.Dataset inside the __init__(). 4 years ago
  jajupmochi 920ebda3f9 Hide deprecation warning in graph_file.py. 4 years ago
  jajupmochi 37158bfffd Update tqdm in parallel. 4 years ago
  jajupmochi cb964cf9f7 Set tqdm usages in all graph kernels with self-defined intervals so that it will print less lines when writing to a file. 4 years ago
  jajupmochi cdcccb2e32 Update get_graph_kernel_by_name(). 4 years ago
  jajupmochi 508cc2c37d Add DataLoader and DataSaver. 4 years ago
  jajupmochi 8cc96ec747 Update Dataset. 4 years ago
  jajupmochi 12dd1cacb7 Update GraphSynthesizer. 4 years ago
  jajupmochi 2dfdd4e586 Use the parameter exist_ok=True in the function os.makedirs to check if a dir exists to avoid problems while paralleling. 4 years ago
  jajupmochi bc5b8b0d25 Refactor: deprecate the usage of "__" for the "private" members and methods, use "_" instead. 4 years ago
  jajupmochi 320964dd16 Update comments, minor bugs for graph kernels. 4 years ago
  jajupmochi e6b92b752b Add the function compute_vertex_kernels. 4 years ago
  jajupmochi 64e76fe1a0 Add math module. 4 years ago
  jajupmochi 95d327f3d8 Add entropy experiments. 4 years ago
  jajupmochi c898c62eb8 Add the chunksize argument to the function version of graph kernels. 4 years ago
  jajupmochi 7f66196251 Update model selection function. 4 years ago
  jajupmochi 92705d8ba1 Update dataset processors. 4 years ago
  jajupmochi 97257a5ef9 Update namespace. 4 years ago
  jajupmochi 293ed9efae Fix bugs and add xps. 4 years ago
  jajupmochi 87e9da8b65 Fix bugs. 4 years ago
  jajupmochi 21b99f4730 Update graph synthesizer. 4 years ago
  jajupmochi d8e206c33c Add graph synthesizer. 4 years ago
  jajupmochi 5dcbe76350 Add SylvesterEquation class. 4 years ago
  jajupmochi 6eb6a4a3ad Add CommonWalk class. 4 years ago
  jajupmochi 31a8a9c51d Add ability to GEDEnv to use pre-defined costs between edge labels. 5 years ago
  jajupmochi 938c3d5ca4 Add ability to GEDEnv to use pre-defined costs between node labels. 5 years ago
  jajupmochi 5eb69de7ea Add ged module. 5 years ago
  jajupmochi e66846f2a8 Implement Marginalized kernel class. 5 years ago
  jajupmochi 34506302ce 1. Solve uncolsed file warning in graph_file.py. 2. Solve CXVPY * and @ warning in MPG. 5 years ago
  jajupmochi 7293234d6c Update and fix bugs in MGE: 5 years ago
  jajupmochi 7e94ecaf31 Add k-nn test. 5 years ago
  jajupmochi 9a365fac98 Fix bugs for enum and add test for median preimage generator. 5 years ago
  jajupmochi f8fc1d9336 Fix bugs in some graph kernels. 2. Update MedianGraphEstimator. 5 years ago
  jajupmochi 1c635daf9d Fix bugs in MedianGraphEstimator.__decrease_order(). 5 years ago
  jajupmochi 25aa64a7dc Fix bugs in MedianGraphEstimator, about __node_maps_from_median and updating nodes/edges. 5 years ago
  jajupmochi 898bec8063 Add class WLSubtree. 5 years ago
  jajupmochi 78999e859c Fix bugs. 5 years ago
  jajupmochi 92c24ffeca Add class Treelet. 5 years ago
  jajupmochi a32e9656b0 Add class PathUpToH. 5 years ago
  jajupmochi c1eff86d49 Update graph_files.py. 5 years ago
  jajupmochi 56bc9a8131 Simplify function gklearn.utils.graph_file.load_from_ds(). 5 years ago
  jajupmochi 5e08e9841e Update function gklearn.utils.graph_file.load_ct() for CTFile V2000. 5 years ago
  jajupmochi 9f0090179d Update function gklearn.utils.graph_file.load_gxl() 5 years ago