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174 Commits (819b2563356b6f995d7619d5add323cea7287f8e)

Author SHA1 Message Date
  jajupmochi 819b256335 Add GED fit distance experiments result figure. 4 years ago
  jajupmochi 09e1d02ae5 Update GED fit distance experiments README. 4 years ago
  jajupmochi 47b13b4bb5 Add GED fit distance experiments. 4 years ago
  jajupmochi 8dce8d8db5 Fix bugs to load all predefined datasets except for Tox21_... and alchemy_.... 4 years ago
  jajupmochi 0373be03ab Modify function to load .cml graph data where an outer cml element is added to the data file (dataset ACE). 4 years ago
  jajupmochi 11a1b46b2e Add support for .cml graph data (dataset Chical). 4 years ago
  jajupmochi 37158bfffd Update tqdm in parallel. 4 years ago
  jajupmochi cb964cf9f7 Set tqdm usages in all graph kernels with self-defined intervals so that it will print less lines when writing to a file. 4 years ago
  jajupmochi c2a219ca87 Fix bugs in pairwise computationWL subtree kernel. 4 years ago
  jajupmochi 7d5a0a8b87 Add deeper traceback for exceptions in test_graph_kernel.py. 4 years ago
  jajupmochi 6e2b2fa164 Fix a bug in WL subtree kernel. 4 years ago
  jajupmochi 3cfe230313 Fix paths when using pre-given datasets in test_graph_kernels.py. 4 years ago
  jajupmochi adb821687d Update test datasets, use pre-given datasets in test_graph_kernels.py. 4 years ago
  jajupmochi 5beedf4bca Rearrange imports in data_fetcher.py. 4 years ago
  jajupmochi edc189005f Use dataset.Dataset in the tests of graph kernel classes. 4 years ago
  jajupmochi e84bc76866 Add parallelization to WL subtree kernel. 4 years ago
  jajupmochi 79cb3a5fcf Add test of equality of graph kernel results for different parameters. 4 years ago
  jajupmochi 41015c2413 Check and update datasets for exp of comparing fcsp. 4 years ago
  jajupmochi cdcccb2e32 Update get_graph_kernel_by_name(). 4 years ago
  jajupmochi 3c8f09948c Add fcsp experiments. 4 years ago
  jajupmochi 3588608356 Test: if sp / ssp kernel yield same results if the fcsp method is turned off. 4 years ago
  jajupmochi 6e1372e8fa Update: Check if all graphs have edge(s) in ShorestPath. 4 years ago
  jajupmochi e2af943262 [Very important!!!] fix bugs in ssp kernel functions, before this update symbolic/dicrete edge labels were ignored! 4 years ago
  jajupmochi 10a2760085 Enable sp kernel and ssp kernel to NOT use fcsp. 4 years ago
  jajupmochi 180c614b44 Fix bugs in gklearn.dataset. 4 years ago
  jajupmochi f67d65bf51 Update Dataset class for predefined datasets. 4 years ago
  jajupmochi 703688228c Fix bugs in the dataset module. 4 years ago
  jajupmochi 35bb1d3f95 Update DataFetcher: do not re-unzip data file if the file exists. 4 years ago
  jajupmochi 508cc2c37d Add DataLoader and DataSaver. 4 years ago
  jajupmochi 8cc96ec747 Update Dataset. 4 years ago
  jajupmochi 12dd1cacb7 Update GraphSynthesizer. 4 years ago
  jajupmochi 052356d39a Add datasets metadata. 4 years ago
  jajupmochi 3bca5f1dc1 Add DataFetcher. 4 years ago
  jajupmochi ed1cc42997 Add graph kernel metadata. 4 years ago
  jajupmochi d3daa95141 Add exps: GED stability on synthesize graphs. 4 years ago
  jajupmochi 5554d0f824 Update exps: Use Python to run sbatch. 4 years ago
  jajupmochi 2dfdd4e586 Use the parameter exist_ok=True in the function os.makedirs to check if a dir exists to avoid problems while paralleling. 4 years ago
  jajupmochi d24cdec251 Update exps: ged stability. 4 years ago
  jajupmochi c6e201ffd0 Update multiple repeats for GED computations. 4 years ago
  jajupmochi bf0bb20dec Add multiple trials for GED computations. 4 years ago
  jajupmochi ffb26889b9 Add exps for the GED stability. 4 years ago
  jajupmochi d529e06052 Update MPG. 4 years ago
  jajupmochi cd124cab61 Refactor: deprecate the usage of "__" for the "private" members and methods, use "_" instead. 4 years ago
  jajupmochi d80f5f64ca Refactor: deprecate the usage of "__" for the "private" members and methods, use "_" instead. 4 years ago
  jajupmochi a54b8de5b3 Refactor: deprecate the usage of "__" for the "private" members and methods, use "_" instead. 4 years ago
  jajupmochi 396547a757 Refactor: deprecate the usage of "__" for the "private" members and methods, use "_" instead. 4 years ago
  jajupmochi 2a065f4fb6 Fix a bug in the WL kernel class. 4 years ago
  jajupmochi bc5b8b0d25 Refactor: deprecate the usage of "__" for the "private" members and methods, use "_" instead. 4 years ago
  jajupmochi 5bdfb68551 Add test for four random walk kernel classes. 4 years ago
  jajupmochi 57f7e5fdc5 Add test for four random walk kernel classes. 4 years ago