graphkit-learn

Commit Graph

Author	SHA1	Message	Date
jajupmochi	2dfdd4e586	Use the parameter exist_ok=True in the function os.makedirs to check if a dir exists to avoid problems while paralleling.	4 years ago
jajupmochi	d529e06052	Update MPG.	4 years ago
jajupmochi	bc5b8b0d25	Refactor: deprecate the usage of "__" for the "private" members and methods, use "_" instead.	4 years ago
jajupmochi	1fd5ffcd0a	Add MedianGraphEstimator for cost matrices learning.	5 years ago
jajupmochi	d64cf4d0ac	Update optimizing part in MedianPreimageGeneratorCML.	5 years ago
jajupmochi	0db57fe3ce	Fix bugs in ged.util.util.get_nb_edit_operations_symbolic_cml() and add test for it.	5 years ago
jajupmochi	31a8a9c51d	Add ability to GEDEnv to use pre-defined costs between edge labels.	5 years ago
jajupmochi	731ab1d45b	Add ability to GEDEnv to use pre-defined costs between node labels.	5 years ago
jajupmochi	d97bfe954c	Add class MedianGraphEstimatorPy and MedianPreimageGeneratorPy which use GEDEnv implemented in pure Python.	5 years ago
jajupmochi	ad6b45b4b0	Add MedianPreimageGeneratorCML.	5 years ago
jajupmochi	5eb69de7ea	Add ged module.	5 years ago
jajupmochi	95dceaa1ca	Add simple preimage experiments.	5 years ago
jajupmochi	91eb4850f7	Fix typos in printout messages.	5 years ago
jajupmochi	fcff223150	Fix bugs to use unnormalized Gram matrix in RPG.	5 years ago
jajupmochi	4d47f61d0b	Fix bugs to use unnormalized Gram matrix in MPG.	5 years ago
jajupmochi	ea615e8c68	Add more possibilities when using random costs in MPG.	5 years ago
jajupmochi	e872ffe3b5	Update random preimage experiment.	5 years ago
jajupmochi	924f028c0c	Update the RPG experiment.	5 years ago
jajupmochi	b4f4f384de	Add time and iteration limits for RPG.	5 years ago
jajupmochi	87e06e9812	expand the number of modifications to increase the possiblity in PRG.	5 years ago
jajupmochi	5c3651e12c	Fix bug: random number genration in RPG when paralelling.	5 years ago
jajupmochi	980dd1c9cf	Add parallel to RPG.	5 years ago
jajupmochi	50da423a1c	Add experiment of random preimage.	5 years ago
jajupmochi	b63a60fe46	Add RandomPreimageGenerator introduced inBakir's paper.	5 years ago
jajupmochi	7e3da6b0bc	Add xp script: remove the best graph from median set.	5 years ago
jajupmochi	9adaebb680	Add xp: remove the best graph from median set.	5 years ago
jajupmochi	06c35201b2	Add option to sort graphs by size when computing GEDs for the sake of the stability.	5 years ago
jajupmochi	cac0cfa114	Add tools to analyze preimage results.	5 years ago
jajupmochi	34506302ce	1. Solve uncolsed file warning in graph_file.py. 2. Solve CXVPY * and @ warning in MPG.	5 years ago
jajupmochi	7293234d6c	Update and fix bugs in MGE: 1. avoid decreasing all median nodes. 2. in __compute_initial_node_labels(), stop appending elements to median_labels when all node_labels are already selected. 3. return False directly in __update_node_label() when node_labels is empty. 4. solve the bug that median is not modified in place in __delete_node_from_median().	5 years ago
jajupmochi	7e94ecaf31	Add k-nn test.	5 years ago
jajupmochi	85ad732a88	Allow zero costs and no triangle rule when updating edit costs in MPG.	5 years ago
jajupmochi	34e82bfce8	Add parallel functions to MGE.	5 years ago
jajupmochi	61d96d52d1	Fix bugs when computing reduced costs in MGE.	5 years ago
jajupmochi	f8fc1d9336	Fix bugs in some graph kernels. 2. Update MedianGraphEstimator.	5 years ago
jajupmochi	1c635daf9d	Fix bugs in MedianGraphEstimator.__decrease_order().	5 years ago
jajupmochi	25aa64a7dc	Fix bugs in MedianGraphEstimator, about __node_maps_from_median and updating nodes/edges.	5 years ago
jajupmochi	b463852b2d	Move method get_graph_kernel_by_name().	5 years ago
jajupmochi	78999e859c	Fix bugs.	5 years ago
jajupmochi	f337fc3fa9	Add class WeisfeilerLehman.	5 years ago
jajupmochi	92c24ffeca	Add class Treelet.	5 years ago
jajupmochi	2248a1308e	Update tests.	5 years ago
jajupmochi	75e42f1838	rearrange gklearn/preimage directory.	5 years ago
jajupmochi	a32e9656b0	Add class PathUpToH.	5 years ago
jajupmochi	c1eff86d49	Update graph_files.py.	5 years ago
jajupmochi	56bc9a8131	Simplify function gklearn.utils.graph_file.load_from_ds().	5 years ago
jajupmochi	9f0090179d	Update function gklearn.utils.graph_file.load_gxl()	5 years ago
jajupmochi	8385bc4cae	Update MedianPreimageGenerator and MedianGraphEstimator for symbolic-labeled graphs and edit cost "CONSTANT".	5 years ago
jajupmochi	45052568eb	1. fix bugs for function of getting numbers of edit operations for non-symbolic labels. 2. fix bugs for load_tud.	5 years ago
jajupmochi	66e18c93e1	1. add function to get median node/edge label in MedianGraphEstimator. 2. update load_tud function. 3. update MedianPreimageGenerator.	5 years ago

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63 Commits (819b2563356b6f995d7619d5add323cea7287f8e)