jajupmochi
efca08fb30
1. upgrate spkernel, now supporting symbolic and non-symbolic node labels, directed and undirected graphs, and allowing user-defined node kernels.
2. model_selection_precomputed can now save all results as human readable text.
3. modify pygraph.utils.utils.floydTransformation and pygraph.utils.graphdataset.get_dataset_attributes.
7 years ago
jajupmochi
bc93c0f80b
I am dead...
7 years ago
jajupmochi
ff2201d42b
Merge branch 'ljia' of https://github.com/jajupmochi/py-graph into ljia
7 years ago
jajupmochi
f684f51ad1
delete useless results.
7 years ago
jajupmochi
1ee3ee0cba
Merge branch 'ljia' of https://github.com/jajupmochi/py-graph into ljia
7 years ago
jajupmochi
503187dc3f
delete useless results files.
7 years ago
jajupmochi
609a7a0124
Merge branch 'ljia' of https://git.litislab.fr/bgauzere/py-graph into ljia
7 years ago
jajupmochi
b0f6470c35
Plus de choses sont changées...
7 years ago
jajupmochi
2db913b7eb
MOD extend marginalized kernel, remove tottering.
MOD modify tree pattern kernel, remove tottering.
MOD save output in function model_selection_precpmputed.
7 years ago
jajupmochi
c615605b08
MOD extend marginalized kernel, remove tottering.
MOD modify tree pattern kernel, remove tottering.
MOD save output in function model_selection_precpmputed.
7 years ago
jajupmochi
b683eb9e5e
remove unnecessary files.
7 years ago
jajupmochi
15b6a97053
modifié : README.md
modifié : notebooks/run_treepatternkernel.ipynb
modifié : notebooks/run_untilnwalkkernel.ipynb
7 years ago
jajupmochi
338f8ba326
modifié : README.md
modifié : notebooks/run_cyclicpatternkernel.ipynb
modifié : notebooks/run_marginalizedkernel_acyclic.ipynb
modifié : notebooks/run_pathkernel_acyclic.ipynb
modifié : notebooks/run_spkernel_acyclic.ipynb
modifié : notebooks/run_treeletkernel_acyclic.ipynb
modifié : notebooks/run_treepatternkernel.ipynb
modifié : notebooks/run_untildpathkernel_acyclic.ipynb
nouveau fichier : notebooks/run_untilnwalkkernel.ipynb
modifié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb
modifié : pygraph/kernels/treePatternKernel.py
modifié : pygraph/kernels/untildPathKernel.py
nouveau fichier : pygraph/kernels/untilnWalkKernel.py
nouveau fichier : pygraph/utils/model_selection_precomputed.py
modifié : pygraph/utils/utils.py
7 years ago
jajupmochi
0d82ebe6b8
copié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb -> .ipynb_checkpoints/run_weisfeilerLehmankernel_acyclic-checkpoint.ipynb
modifié : README.md
nouveau fichier : notebooks/run_cyclicpatternkernel.ipynb
modifié : notebooks/run_marginalizedkernel_acyclic.ipynb
modifié : notebooks/run_pathkernel_acyclic.ipynb
modifié : notebooks/run_spkernel_acyclic.ipynb
modifié : notebooks/run_treeletkernel_acyclic.ipynb
nouveau fichier : notebooks/run_treepatternkernel.ipynb
modifié : notebooks/run_weisfeilerLehmankernel_acyclic.ipynb
nouveau fichier : pygraph/kernels/cyclicPatternKernel.py
modifié : pygraph/kernels/deltaKernel.py
modifié : pygraph/kernels/pathKernel.py
modifié : pygraph/kernels/results.md
modifié : pygraph/kernels/spKernel.py
nouveau fichier : pygraph/kernels/treePatternKernel.py
modifié : pygraph/kernels/treeletKernel.py
modifié : pygraph/kernels/untildPathKernel.py
modifié : pygraph/kernels/weisfeilerLehmanKernel.py
modifié : pygraph/utils/graphfiles.py
modifié : pygraph/utils/utils.py
nouveau fichier : run_cyclic.py
7 years ago
jajupmochi
24eae65154
* ADD *path kernel up to depth d* and its result on dataset Asyclic.
* MOD treelet kernel, retrieve canonkeys of all graphs before calculate kernels, wildly speed it up.
7 years ago
jajupmochi
713edf2794
ADD comments to code of treelet kernel.
7 years ago
jajupmochi
a719ac6859
* ADD *treelet kernel* and its result on dataset Asyclic. - linlin
* MOD the way to calculate WL subtree kernel, correct its results. - linlin
* ADD *kernel_train_test* and *split_train_test* to wrap training and testing process. - linlin
* MOD readme.md file, add detailed results of each kernel. - linlin
7 years ago
jajupmochi
5d0d9e350b
* ADD *treelet kernel* and its result on dataset Asyclic. - linlin
* MOD the way to calculate WL subtree kernel, correct its results. - linlin
* ADD *kernel_train_test* and *split_train_test* to wrap training and testing process. - linlin
* MOD readme.md file, add detailed results of each kernel. - linlin
7 years ago
jajupmochi
460e846a8f
* ADD calculation of the time spend to acquire kernel matrices for each kernel. - linlin
* MOD floydTransformation function, calculate shortest paths taking into consideration user-defined edge weight. - linlin
* MOD implementation of nodes and edges attributes genericity for all kernels. - linlin
* ADD detailed results file results.md. - linlin
* MOD Weisfeiler-Lehman subtree kernel and the test code. - linlin
7 years ago
jajupmochi
6e7098004c
* MOD Implementation of attributes genericity for both gxl and ct functions
7 years ago
jajupmochi
1cac6d23af
* ADD Weisfeiler-Lehman subtree kernel and its result on dataset Asyclic.
7 years ago
jajupmochi
0184a2a06b
* ADD mean average path kernel and its result on dataset Asyclic. - linlin
* ADD delta kernel. - linlin
* MOD reconstruction the code of marginalized kernel. - linlin
7 years ago
jajupmochi
8ef59310f9
Merge branch 'ljia' of https://git.litislab.fr/bgauzere/py-graph into ljia
7 years ago
jajupmochi
5fa8e5aeea
initial
7 years ago
Benoit GAUZERE
4cd3654e90
Remove non pertinent files
7 years ago
jajupmochi
d8a96ce408
Merge branch 'master' of https://git.litislab.fr/bgauzere/py-graph
add pygraph/kernels/spkernel.py
modify pygraph/utils/util.py and pygraph/utils/graphfiles.py
7 years ago
jajupmochi
4ade070e23
commit
7 years ago
Benoit GAUZERE
66129a66df
Update to NetworkX 2.0
7 years ago
Benoit GAUZERE
24a8ec3ad3
Re structuration of project
7 years ago
Benoit GAUZERE
eda860455d
Re structuration of project
7 years ago
Benoit GAUZERE
d9dfc8ec68
Update of costfunctions hierarchy to distinguish cost function for ged and for cost matrix
7 years ago
Benoit GAUZERE
a3e75c82b7
This notebook compute ged approx using 2 methods and 2 solvers
7 years ago
Benoit GAUZERE
91cb5d2ee6
First init - may contains some errors...
7 years ago