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  • 57cc316 Change names of datasets. by jajupmochi 2020-04-13 17:36:18 +0200
  • a32e965 Add class PathUpToH. by jajupmochi 2020-04-13 17:26:45 +0200
  • 3635dcc Merge pull request #15 from jajupmochi/v0.2 by linlin 2020-04-12 20:23:45 +0200
  • 2d07f79 Add Python 3.8 to CI tests. by jajupmochi 2020-04-12 20:23:01 +0200
  • 6a0288e Update setup.py install_requires. by jajupmochi 2020-04-12 14:03:31 +0000
  • fda25e3 (tag: v0.1, v0.1) Update setup.py. by jajupmochi 2020-04-11 14:08:30 +0200
  • a2c58ac Add path_up_to_h.py. by jajupmochi 2020-04-11 14:02:19 +0200
  • f4f264b Update setup.py. by jajupmochi 2020-04-11 14:00:43 +0200
  • 66119f0 Update references. by jajupmochi 2020-04-11 13:04:42 +0200
  • 1151e80 Merge pull request #14 from jajupmochi/v0.2 by linlin 2020-04-10 18:24:39 +0200
  • c1eff86 Update graph_files.py. by jajupmochi 2020-04-10 18:18:43 +0200
  • 56bc9a8 Simplify function gklearn.utils.graph_file.load_from_ds(). by jajupmochi 2020-04-10 16:11:20 +0200
  • 5e08e98 Update function gklearn.utils.graph_file.load_ct() for CTFile V2000. by jajupmochi 2020-04-10 15:52:47 +0200
  • 84ebbcd Merge pull request #13 from jajupmochi/v0.2 by linlin 2020-04-10 12:33:06 +0200
  • 9f00901 Update function gklearn.utils.graph_file.load_gxl() by jajupmochi 2020-04-10 12:32:23 +0200
  • ee5c784 Merge pull request #12 from jajupmochi/v0.2 by linlin 2020-04-10 11:02:14 +0200
  • aad2031 Update .travis.yml. Test the library on more Python version. by jajupmochi 2020-04-10 11:01:33 +0200
  • 8efc673 Merge pull request #11 from jajupmochi/v0.2 by linlin 2020-04-10 10:57:29 +0200
  • a9197b9 Update .travis.yml. Test the library on more Python version. by jajupmochi 2020-04-10 10:56:47 +0200
  • 8385bc4 Update MedianPreimageGenerator and MedianGraphEstimator for symbolic-labeled graphs and edit cost "CONSTANT". by jajupmochi 2020-04-10 10:35:54 +0200
  • 4505256 1. fix bugs for function of getting numbers of edit operations for non-symbolic labels. 2. fix bugs for load_tud. by jajupmochi 2020-04-09 12:09:49 +0200
  • 66e18c9 1. add function to get median node/edge label in MedianGraphEstimator. 2. update load_tud function. 3. update MedianPreimageGenerator. by jajupmochi 2020-04-08 18:05:35 +0200
  • ec682bb Merge pull request #10 from jajupmochi/v0.2 by linlin 2020-04-08 12:32:51 +0200
  • d60a6e3 add gklearn.utils.graph_files module, update load_tud function and relevant modules. by jajupmochi 2020-04-08 12:32:06 +0200
  • 9de092d Merge pull request #9 from jajupmochi/v0.2 by linlin 2020-04-07 17:52:03 +0200
  • 9fc8fbf add trim_dataset() method to class Dataset. by jajupmochi 2020-04-07 17:50:35 +0200
  • 3deb319 Merge pull request #8 from jajupmochi/v0.2 by linlin 2020-04-07 17:10:45 +0200
  • 7a16cfb update versions of requirements in README.md. by jajupmochi 2020-04-07 17:08:26 +0200
  • f02ec93 add class ShortestPath. by jajupmochi 2020-04-07 17:04:34 +0200
  • 376418d Merge pull request #7 from jajupmochi/v0.2 by linlin 2020-04-07 16:57:11 +0200
  • b4747fc fix bug "AttributeError("'Graph' object has no attribute 'node'",)" for new version of NetworkX. by jajupmochi 2020-04-07 16:55:36 +0200
  • 1a652e5 Merge pull request #5 from jajupmochi/v0.2 by linlin 2020-04-07 14:16:46 +0200
  • 5dae69b 1. fix bugs. 2. update README.md. 3. update preimage module, class Dataset. 4. update requirements. 5. add helper function to compute Gram matrix for each class. by jajupmochi 2020-04-07 14:13:07 +0200
  • 584e580 Update issue templates by linlin 2020-04-04 12:48:57 +0200
  • 8804465 1. update termination criterion of iteration in class MedianPreimageGenerator. 2. add helper function generate_median_preimage_by_class in gklearn.preimage.utils. by jajupmochi 2020-04-02 22:04:21 +0200
  • 0024d6a Merge pull request #4 from jajupmochi/v0.2 by linlin 2020-04-02 12:39:05 +0200
  • 4fb1d5f clean repo. by jajupmochi 2020-04-02 12:35:33 +0200
  • 7bdd77b 1. add preimage module. 2. add gedlib module. 3. add ged module. 4. create Kernel class and StructrualSP class. 5. rearrange directory. by jajupmochi 2020-04-02 12:22:37 +0200
  • 6c1e8a7 clear repo: remove useless files. by jajupmochi 2020-03-27 11:39:19 +0100
  • b5dc9aa Revert "clear repo: remove useless files." by jajupmochi 2020-03-27 11:16:36 +0100
  • a8948a3 clear repo: remove useless files. by jajupmochi 2020-03-27 11:07:07 +0100
  • 05d00df clear repo: test 2. by jajupmochi 2020-03-27 11:02:08 +0100
  • 7ff9653 Revert "clear repo: test 2." by jajupmochi 2020-03-27 10:59:30 +0100
  • 7ab225d clear repo: test 2. by jajupmochi 2020-03-27 10:57:13 +0100
  • 2143ff1 clear repo: a test. by jajupmochi 2020-03-27 10:53:08 +0100
  • f55a4af Revert "clear repo: remove useless files." by jajupmochi 2020-03-27 10:47:28 +0100
  • dcff21c Revert "clear repo: remove preimage." by jajupmochi 2020-03-27 10:46:00 +0100
  • f1d4a6e clear repo: remove useless files. by jajupmochi 2020-03-27 09:48:06 +0100
  • 5fe81a9 clear repo: remove preimage. by jajupmochi 2020-03-27 09:34:26 +0100
  • 2990378 update preimage. by jajupmochi 2020-03-27 09:33:27 +0100
  • 076a150 update .travis.yml. by jajupmochi 2020-03-12 15:36:41 +0100
  • a7f911e fix bugs in tests. by jajupmochi 2020-03-10 14:31:36 +0100
  • e4ae738 fix bugs in tests. by jajupmochi 2020-03-10 14:23:21 +0100
  • 1d49a75 update datasets used in the tests. by jajupmochi 2020-03-10 14:02:50 +0100
  • 2d1708f add dataset Fingerprint. by jajupmochi 2020-03-02 20:04:57 +0100
  • d9e9fbb test all graph kernels. by jajupmochi 2020-03-02 19:58:29 +0100
  • 02e7e13 allow pytest-cov to consider codes in Python pool. by jajupmochi 2020-03-02 17:10:42 +0100
  • 2ab7080 fix bugs for pytest. by jajupmochi 2020-03-02 15:47:57 +0100
  • 1306032 fix a bug for pytest. by jajupmochi 2020-03-02 15:22:15 +0100
  • 8ea4445 use pytest-cov. by jajupmochi 2020-03-02 15:17:15 +0100
  • 562ddf7 add tests. by jajupmochi 2020-03-02 15:07:34 +0100
  • f60bc61 update .travis.yml. by jajupmochi 2020-02-28 18:18:45 +0100
  • 99631dc update .readthedocs.yml. by jajupmochi 2020-02-28 11:36:51 +0100
  • 4e5a08b update .readthedocs.yml. by jajupmochi 2020-02-28 11:32:13 +0100
  • fbf944c update .readthedocs.yml. by jajupmochi 2020-02-28 11:30:00 +0100
  • f80d91a update .readthedocs.yml. by jajupmochi 2020-02-28 11:23:25 +0100
  • 578e27b update .readthedocs.yml. by jajupmochi 2020-02-28 11:22:33 +0100
  • 3faed90 update docs conf. by jajupmochi 2020-02-28 11:09:12 +0100
  • d1d0cdf add PyPI version badge. by jajupmochi 2020-02-27 19:53:34 +0100
  • dcccc4e update README.md by jajupmochi 2020-02-27 19:35:30 +0100
  • e406139 update docs by jajupmochi 2020-02-27 19:21:52 +0100
  • 1126b61 update .readthedocs.yml by jajupmochi 2020-02-27 18:16:07 +0100
  • fc9ccc7 update readthedocs. by jajupmochi 2020-02-27 18:10:20 +0100
  • d6b252a rename library. by jajupmochi 2020-02-27 17:56:17 +0100
  • 5b91920 update pre-image method for Letter-h dataset by jajupmochi 2020-01-29 18:16:46 +0100
  • 461de38 add parallel switch for structural sp kernel. by jajupmochi 2020-01-29 18:16:01 +0100
  • c38dc97 add Readthedocs badge. by jajupmochi 2020-01-28 18:25:03 +0100
  • 933a51a add docs by jajupmochi 2020-01-28 18:01:07 +0100
  • f7fcc36 add Codecov badge. by jajupmochi 2020-01-28 14:34:04 +0100
  • 9a9d1d7 add Codecov. by jajupmochi 2020-01-28 14:26:50 +0100
  • 956f0a5 add requirements.txt, add a test for travis CI. by jajupmochi 2020-01-22 16:22:54 +0100
  • eeebdf9 add Travis CI badge in README. by jajupmochi 2020-01-22 15:53:28 +0100
  • 3728a39 add Travis CI. by jajupmochi 2020-01-22 15:45:33 +0100
  • fd25350 update preimage. by jajupmochi 2020-01-15 17:01:41 +0100
  • 1a34c9f update preimege/ged.py by jajupmochi 2020-01-15 16:50:14 +0100
  • 0cc89ae add dataset monoterpenoides. by jajupmochi 2019-11-19 10:29:01 +0100
  • 80e64a4 update pre-image by jajupmochi 2019-11-19 10:21:38 +0100
  • b7112cd update pre-image. by jajupmochi 2019-11-19 10:06:25 +0100
  • e3985c5 fitDistance.py: print and save results, update codes of quadratic program. This is the last version with edit costs having no other constraints than being no smaller than 0. by jajupmochi 2019-10-24 12:00:17 +0200
  • ee6c796 1. update fitDistance.py. 1.1 add parallel computation of GEDs. 1.2 randomly initialize edit costs instead of uniform initialization. 1.3 remove the constrain that sum of the edit costs has to be equal to 1, avoiding sparsity. by jajupmochi 2019-10-22 17:05:29 +0200
  • 2876f75 Update fitDistance.py; constrain edit costs (c_i >= 0, sum(c_i) = 1). by jajupmochi 2019-10-21 18:46:27 +0200
  • dd810b9 Update pre-image. by jajupmochi 2019-10-18 18:03:57 +0200
  • 8c03f1b Update the GED method, use new gedlibpy library. by jajupmochi 2019-10-03 16:11:22 +0200
  • edc3db4 1. allow pre-image algorithm based on IAM to use all k nearest graphs as the initials of IAM. 2. fix a bug: in preimage_iam_random_mix function, sort D_k after updating it. by jajupmochi 2019-09-30 15:28:37 +0200
  • 57e13c9 Update pre-image. by jajupmochi 2019-09-25 14:45:50 +0200
  • df1a0c8 Changes to be committed: modified: pygraph/utils/model_selection_precomputed.py by jajupmochi 2019-07-17 16:53:37 +0200
  • 221b528 Update comments of tool functions. by jajupmochi 2019-07-17 15:11:55 +0200
  • 344a6f8 Modify function comments of graph kernels. by jajupmochi 2019-07-16 15:47:21 +0200
  • b7eef40 1. add parallelization choice into the treelet kernel, including "imap_unordered" and None. 2. modify the treelet kernel, use tuples to store canonkeys instead of strings in case that some labels strings contain more than 1 character. by jajupmochi 2019-07-08 16:19:54 +0200
  • 73b2b7d 1. add wl subtree kernel. 2. update datasets. by jajupmochi 2019-05-24 16:35:56 +0200