#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Check basic properties of gram matrices. Created on Wed Sep 19 15:32:29 2018 @author: ljia """ import numpy as np import matplotlib.pyplot as plt from numpy.linalg import eig # read gram matrices from file. results_dir = '../results/marginalizedkernel/myria' ds_name = 'ENZYMES' gmfile = np.load(results_dir + '/' + ds_name + '.gm.npz') #print('gm time: ', gmfile['gmtime']) # a list to store gram matrices for all param_grid_precomputed gram_matrices = gmfile['gms'] # param_list_pre_revised = gmfile['params'] # list to store param grids precomputed ignoring the useless ones #y = gmfile['y'].tolist() #x = gram_matrices[0] for idx, x in enumerate(gram_matrices): print() print(idx) plt.imshow(x) plt.colorbar() plt.savefig('../check_gm/' + ds_name + '.gm.eps', format='eps', dpi=300) # print(np.transpose(x)) print('if symmetric: ', np.array_equal(x, np.transpose(x))) print('diag: ', np.diag(x)) print('sum diag < 0.1: ', np.sum(np.diag(x) < 0.1)) print('min, max diag: ', min(np.diag(x)), max(np.diag(x))) print('min, max matrix: ', np.min(x), np.max(x)) for i in range(len(x)): for j in range(len(x)): if x[i][j] > 1 + 1e-9: print(i, j) raise Exception('value bigger than 1 with index', i, j) print('mean x: ', np.mean(np.mean(x))) [lamnda, v] = eig(x) print('min, max lambda: ', min(lamnda), max(lamnda)) if -1e-10 > min(lamnda): raise Exception('wrong eigen values.')