#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Tue Jan 14 15:39:29 2020 @author: ljia """ import multiprocessing import functools from gklearn.preimage.utils import generate_median_preimages_by_class def test_median_preimage_generator(): """MAO, Treelet, using CONSTANT, symbolic only. """ from gklearn.utils.kernels import polynomialkernel # set parameters. ds_name = 'MAO' # mpg_options = {'fit_method': 'k-graphs', 'init_ecc': [4, 4, 2, 1, 1, 1], # 'ds_name': ds_name, 'parallel': True, # False 'time_limit_in_sec': 0, 'max_itrs': 3, # 'max_itrs_without_update': 3, 'epsilon_residual': 0.01, 'epsilon_ec': 0.1, 'verbose': 2} pkernel = functools.partial(polynomialkernel, d=4, c=1e+7) kernel_options = {'name': 'Treelet', # 'sub_kernel': pkernel, 'parallel': 'imap_unordered', # 'parallel': None, 'n_jobs': multiprocessing.cpu_count(), 'normalize': True, 'verbose': 2} ged_options = {'method': 'IPFP', 'initialization_method': 'RANDOM', # 'NODE' 'initial_solutions': 1, # 1 'edit_cost': 'CONSTANT', # 'attr_distance': 'euclidean', 'ratio_runs_from_initial_solutions': 1, 'threads': multiprocessing.cpu_count(), 'init_option': 'EAGER_WITHOUT_SHUFFLED_COPIES'} mge_options = {'init_type': 'MEDOID', 'random_inits': 10, 'time_limit': 600, 'verbose': 2, 'refine': False} save_results = True dir_save = ds_name + '.' + kernel_options['name'] + '.symb.pytest/' irrelevant_labels = {'node_attrs': ['x', 'y', 'z'], 'edge_labels': ['bond_stereo']} # edge_required = False # # print settings. print('parameters:') print('dataset name:', ds_name) print('mpg_options:', mpg_options) print('kernel_options:', kernel_options) print('ged_options:', ged_options) print('mge_options:', mge_options) print('save_results:', save_results) print('irrelevant_labels:', irrelevant_labels) print() # generate preimages. for fit_method in ['k-graphs', 'expert', 'random']: print('\n-------------------------------------') print('fit method:', fit_method, '\n') mpg_options['fit_method'] = fit_method try: generate_median_preimages_by_class(ds_name, mpg_options, kernel_options, ged_options, mge_options, save_results=save_results, save_medians=True, plot_medians=True, load_gm='auto', dir_save=dir_save, irrelevant_labels=irrelevant_labels, edge_required=edge_required, cut_range=range(0, 4)) except Exception as exception: assert False, exception if __name__ == '__main__': test_median_preimage_generator()