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<h1 id="index">Index</h1>

<div class="genindex-jumpbox">
 <a href="#C"><strong>C</strong></a>
 | <a href="#D"><strong>D</strong></a>
 | <a href="#F"><strong>F</strong></a>
 | <a href="#G"><strong>G</strong></a>
 | <a href="#I"><strong>I</strong></a>
 | <a href="#K"><strong>K</strong></a>
 | <a href="#L"><strong>L</strong></a>
 | <a href="#M"><strong>M</strong></a>
 | <a href="#P"><strong>P</strong></a>
 | <a href="#R"><strong>R</strong></a>
 | <a href="#S"><strong>S</strong></a>
 | <a href="#T"><strong>T</strong></a>
 | <a href="#U"><strong>U</strong></a>
 | <a href="#W"><strong>W</strong></a>
 
</div>
<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.compute_gram_matrices">compute_gram_matrices() (in module pygraph.utils.model_selection_precomputed)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="D">D</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.deleteWord">deleteWord() (pygraph.utils.trie.Trie method)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.kernels.deltakernel">deltakernel() (in module pygraph.utils.kernels)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.utils.direct_product">direct_product() (in module pygraph.utils.utils)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="F">F</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.utils.floydTransformation">floydTransformation() (in module pygraph.utils.utils)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.logger2file.Logger.flush">flush() (pygraph.utils.logger2file.Logger method)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="G">G</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.kernels.gaussiankernel">gaussiankernel() (in module pygraph.utils.kernels)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.graphdataset.get_dataset_attributes">get_dataset_attributes() (in module pygraph.utils.graphdataset)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.utils.get_edge_labels">get_edge_labels() (in module pygraph.utils.utils)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.utils.get_node_labels">get_node_labels() (in module pygraph.utils.utils)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.getNode">getNode() (pygraph.utils.trie.Trie method)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.utils.getSPGraph">getSPGraph() (in module pygraph.utils.utils)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.utils.getSPLengths">getSPLengths() (in module pygraph.utils.utils)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.utils.graph_deepcopy">graph_deepcopy() (in module pygraph.utils.utils)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.utils.graph_isIdentical">graph_isIdentical() (in module pygraph.utils.utils)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="I">I</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.insertWord">insertWord() (pygraph.utils.trie.Trie method)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.isNotebook.isNotebook">isNotebook() (in module pygraph.utils.isNotebook)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="K">K</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.kernels.kernelproduct">kernelproduct() (in module pygraph.utils.kernels)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.kernels.kernelsum">kernelsum() (in module pygraph.utils.kernels)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="L">L</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.kernels.linearkernel">linearkernel() (in module pygraph.utils.kernels)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.load_from_json">load_from_json() (pygraph.utils.trie.Trie method)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.load_from_pickle">load_from_pickle() (pygraph.utils.trie.Trie method)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadCT">loadCT() (in module pygraph.utils.graphfiles)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadDataset">loadDataset() (in module pygraph.utils.graphfiles)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadFromDS">loadFromDS() (in module pygraph.utils.graphfiles)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadFromXML">loadFromXML() (in module pygraph.utils.graphfiles)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadGXL">loadGXL() (in module pygraph.utils.graphfiles)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadMAT">loadMAT() (in module pygraph.utils.graphfiles)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadSDF">loadSDF() (in module pygraph.utils.graphfiles)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.loadTXT">loadTXT() (in module pygraph.utils.graphfiles)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.logger2file.Logger">Logger (class in pygraph.utils.logger2file)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="M">M</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.model_selection_for_precomputed_kernel">model_selection_for_precomputed_kernel() (in module pygraph.utils.model_selection_precomputed)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="P">P</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.parallel.parallel_gm">parallel_gm() (in module pygraph.utils.parallel)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.parallel.parallel_me">parallel_me() (in module pygraph.utils.parallel)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.parallel_trial_do">parallel_trial_do() (in module pygraph.utils.model_selection_precomputed)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.kernels.polynomialkernel">polynomialkernel() (in module pygraph.utils.kernels)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.printResultsInTable">printResultsInTable() (in module pygraph.utils.model_selection_precomputed)</a>
</li>
      <li><a href="pygraph.html#module-pygraph">pygraph (module)</a>
</li>
      <li><a href="pygraph.utils.html#module-pygraph.utils">pygraph.utils (module)</a>
</li>
      <li><a href="pygraph.utils.html#module-pygraph.utils.graphdataset">pygraph.utils.graphdataset (module)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#module-pygraph.utils.graphfiles">pygraph.utils.graphfiles (module)</a>
</li>
      <li><a href="pygraph.utils.html#module-pygraph.utils.isNotebook">pygraph.utils.isNotebook (module)</a>
</li>
      <li><a href="pygraph.utils.html#module-pygraph.utils.kernels">pygraph.utils.kernels (module)</a>
</li>
      <li><a href="pygraph.utils.html#module-pygraph.utils.logger2file">pygraph.utils.logger2file (module)</a>
</li>
      <li><a href="pygraph.utils.html#module-pygraph.utils.model_selection_precomputed">pygraph.utils.model_selection_precomputed (module)</a>
</li>
      <li><a href="pygraph.utils.html#module-pygraph.utils.parallel">pygraph.utils.parallel (module)</a>
</li>
      <li><a href="pygraph.utils.html#module-pygraph.utils.trie">pygraph.utils.trie (module)</a>
</li>
      <li><a href="pygraph.utils.html#module-pygraph.utils.utils">pygraph.utils.utils (module)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="R">R</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.read_gram_matrices_from_file">read_gram_matrices_from_file() (in module pygraph.utils.model_selection_precomputed)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="S">S</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.save_to_json">save_to_json() (pygraph.utils.trie.Trie method)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.save_to_pickle">save_to_pickle() (pygraph.utils.trie.Trie method)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.saveDataset">saveDataset() (in module pygraph.utils.graphfiles)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.graphfiles.saveGXL">saveGXL() (in module pygraph.utils.graphfiles)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.searchWord">searchWord() (pygraph.utils.trie.Trie method)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.searchWordPrefix">searchWordPrefix() (pygraph.utils.trie.Trie method)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="T">T</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie.to_json">to_json() (pygraph.utils.trie.Trie method)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.model_selection_precomputed.trial_do">trial_do() (in module pygraph.utils.model_selection_precomputed)</a>
</li>
      <li><a href="pygraph.utils.html#pygraph.utils.trie.Trie">Trie (class in pygraph.utils.trie)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="U">U</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.utils.untotterTransformation">untotterTransformation() (in module pygraph.utils.utils)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="W">W</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="pygraph.utils.html#pygraph.utils.logger2file.Logger.write">write() (pygraph.utils.logger2file.Logger method)</a>
</li>
  </ul></td>
</tr></table>


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