@@ -1 +1 @@ | |||||
{"id": "5478db87-2eea-45c7-b0c1-f6a2fb180a61", "schema": "https://metadata.datadrivendiscovery.org/schemas/v0/pipeline.json", "created": "2021-02-04T06:35:44.477042Z", "inputs": [{"name": "inputs"}], "outputs": [{"data": "steps.6.produce", "name": "output predictions"}], "steps": [{"type": "PRIMITIVE", "primitive": {"id": "4b42ce1e-9b98-4a25-b68e-fad13311eb65", "version": "0.3.0", "python_path": "d3m.primitives.tods.data_processing.dataset_to_dataframe", "name": "Extract a DataFrame from a Dataset", "digest": "f817673b67b0bf1fad5efb694e44a59b9c15931520b419f3a852f79152f58bb7"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "inputs.0"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "d510cb7a-1782-4f51-b44c-58f0236e47c7", "version": "0.6.0", "python_path": "d3m.primitives.tods.data_processing.column_parser", "name": "Parses strings into their types", "digest": "6aea6b48ddcd847030b423ebf2cac62e67b2935d93f75d10fa0712ea019b2739"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.0.produce"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "4503a4c6-42f7-45a1-a1d4-ed69699cf5e1", "version": "0.4.0", "python_path": "d3m.primitives.tods.data_processing.extract_columns_by_semantic_types", "name": "Extracts columns by semantic type", "digest": "e165d114bca8e1e47f349fffbbf2cf8872f0222328287e24acd8ac8c1cf2511c"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.1.produce"}}, "outputs": [{"id": "produce"}], "hyperparams": {"semantic_types": {"type": "VALUE", "data": ["https://metadata.datadrivendiscovery.org/types/Attribute"]}}}, {"type": "PRIMITIVE", "primitive": {"id": "4503a4c6-42f7-45a1-a1d4-ed69699cf5e1", "version": "0.4.0", "python_path": "d3m.primitives.tods.data_processing.extract_columns_by_semantic_types", "name": "Extracts columns by semantic type", "digest": "e165d114bca8e1e47f349fffbbf2cf8872f0222328287e24acd8ac8c1cf2511c"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.0.produce"}}, "outputs": [{"id": "produce"}], "hyperparams": {"semantic_types": {"type": "VALUE", "data": ["https://metadata.datadrivendiscovery.org/types/TrueTarget"]}}}, {"type": "PRIMITIVE", "primitive": {"id": "642de2e7-5590-3cab-9266-2a53c326c461", "version": "0.0.1", "python_path": "d3m.primitives.tods.timeseries_processing.transformation.axiswise_scaler", "name": "Axis_wise_scale"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.2.produce"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "67e7fcdf-d645-3417-9aa4-85cd369487d9", "version": "0.0.1", "python_path": "d3m.primitives.tods.detection_algorithm.pyod_ae", "name": "TODS.anomaly_detection_primitives.AutoEncoder"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.4.produce"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "8d38b340-f83f-4877-baaa-162f8e551736", "version": "0.3.0", "python_path": "d3m.primitives.tods.data_processing.construct_predictions", "name": "Construct pipeline predictions output", "digest": "c8a5cb30cc5b6742dbf024cbd54d5283937864c5d5dd9f3d0fb242fa406b1736"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.5.produce"}, "reference": {"type": "CONTAINER", "data": "steps.1.produce"}}, "outputs": [{"id": "produce"}]}], "digest": "aa2c6d9f9a56d76f5f2e8bb29ad5b21b43970a2acb7a7a7695e057bfcd1fdabd"} | |||||
{"id": "bfd8aedf-36be-4dad-af8a-c324a03db5f9", "schema": "https://metadata.datadrivendiscovery.org/schemas/v0/pipeline.json", "created": "2021-02-13T17:02:35.500457Z", "inputs": [{"name": "inputs"}], "outputs": [{"data": "steps.6.produce", "name": "output predictions"}], "steps": [{"type": "PRIMITIVE", "primitive": {"id": "c78138d9-9377-31dc-aee8-83d9df049c60", "version": "0.3.0", "python_path": "d3m.primitives.tods.data_processing.dataset_to_dataframe", "name": "Extract a DataFrame from a Dataset"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "inputs.0"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "81235c29-aeb9-3828-911a-1b25319b6998", "version": "0.6.0", "python_path": "d3m.primitives.tods.data_processing.column_parser", "name": "Parses strings into their types"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.0.produce"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "a996cd89-ddf0-367f-8e7f-8c013cbc2891", "version": "0.4.0", "python_path": "d3m.primitives.tods.data_processing.extract_columns_by_semantic_types", "name": "Extracts columns by semantic type"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.1.produce"}}, "outputs": [{"id": "produce"}], "hyperparams": {"semantic_types": {"type": "VALUE", "data": ["https://metadata.datadrivendiscovery.org/types/Attribute"]}}}, {"type": "PRIMITIVE", "primitive": {"id": "a996cd89-ddf0-367f-8e7f-8c013cbc2891", "version": "0.4.0", "python_path": "d3m.primitives.tods.data_processing.extract_columns_by_semantic_types", "name": "Extracts columns by semantic type"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.0.produce"}}, "outputs": [{"id": "produce"}], "hyperparams": {"semantic_types": {"type": "VALUE", "data": ["https://metadata.datadrivendiscovery.org/types/TrueTarget"]}}}, {"type": "PRIMITIVE", "primitive": {"id": "642de2e7-5590-3cab-9266-2a53c326c461", "version": "0.0.1", "python_path": "d3m.primitives.tods.timeseries_processing.transformation.axiswise_scaler", "name": "Axis_wise_scale"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.2.produce"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "67e7fcdf-d645-3417-9aa4-85cd369487d9", "version": "0.0.1", "python_path": "d3m.primitives.tods.detection_algorithm.pyod_ae", "name": "TODS.anomaly_detection_primitives.AutoEncoder"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.4.produce"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "2530840a-07d4-3874-b7d8-9eb5e4ae2bf3", "version": "0.3.0", "python_path": "d3m.primitives.tods.data_processing.construct_predictions", "name": "Construct pipeline predictions output"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.5.produce"}, "reference": {"type": "CONTAINER", "data": "steps.1.produce"}}, "outputs": [{"id": "produce"}]}], "digest": "01ad8ccf817150186ca15157a4f02ee1f738582137321a8a5a4a3252832ce555"} |
@@ -29,12 +29,12 @@ pipeline_description.add_step(step_2) | |||||
# Step 3: TruncatedSVD | # Step 3: TruncatedSVD | ||||
step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.feature_analysis.truncated_svd')) | step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.feature_analysis.truncated_svd')) | ||||
step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.3.produce') | |||||
step_3.add_output('produce') | |||||
step_3.add_hyperparameter(name = 'n_components', argument_type=ArgumentType.VALUE, data = 3) | step_3.add_hyperparameter(name = 'n_components', argument_type=ArgumentType.VALUE, data = 3) | ||||
step_3.add_hyperparameter(name = 'use_columns', argument_type=ArgumentType.VALUE, data = (2, 3, 4, 5)) | step_3.add_hyperparameter(name = 'use_columns', argument_type=ArgumentType.VALUE, data = (2, 3, 4, 5)) | ||||
step_3.add_hyperparameter(name = 'return_result', argument_type=ArgumentType.VALUE, data = 'append') | step_3.add_hyperparameter(name = 'return_result', argument_type=ArgumentType.VALUE, data = 'append') | ||||
step_3.add_hyperparameter(name = 'use_semantic_types', argument_type=ArgumentType.VALUE, data = True) | step_3.add_hyperparameter(name = 'use_semantic_types', argument_type=ArgumentType.VALUE, data = True) | ||||
step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') | |||||
step_3.add_output('produce') | |||||
pipeline_description.add_step(step_3) | pipeline_description.add_step(step_3) | ||||
# Final Output | # Final Output | ||||
@@ -44,4 +44,4 @@ pipeline_description.add_output(name='output predictions', data_reference='steps | |||||
data = pipeline_description.to_json() | data = pipeline_description.to_json() | ||||
with open('example_pipeline.json', 'w') as f: | with open('example_pipeline.json', 'w') as f: | ||||
f.write(data) | f.write(data) | ||||
print(data) | |||||
print(data) |
@@ -1,12 +1,13 @@ | |||||
#!/bin/bash | #!/bin/bash | ||||
#modules="data_processing timeseries_processing feature_analysis detection_algorithms reinforcement" | #modules="data_processing timeseries_processing feature_analysis detection_algorithms reinforcement" | ||||
modules="data_processing timeseries_processing" | |||||
#modules="data_processing timeseries_processing" | |||||
modules="feature_analysis" | |||||
#test_scripts=$(ls primitive_tests | grep -v -f tested_file.txt) | #test_scripts=$(ls primitive_tests | grep -v -f tested_file.txt) | ||||
for module in $modules | for module in $modules | ||||
do | do | ||||
test_scripts=$(ls $module) | |||||
test_scripts=$(ls $module | grep -v -f tested_file.txt) | |||||
for file in $test_scripts | for file in $test_scripts | ||||
do | do | ||||
@@ -220,13 +220,17 @@ class AutoCorrelationPrimitive(transformer.TransformerPrimitiveBase[Inputs, Outp | |||||
'__author__': "DATA Lab @Texas A&M University", | '__author__': "DATA Lab @Texas A&M University", | ||||
'name': "AutoCorrelation of values", | 'name': "AutoCorrelation of values", | ||||
'python_path': 'd3m.primitives.tods.feature_analysis.auto_correlation', | 'python_path': 'd3m.primitives.tods.feature_analysis.auto_correlation', | ||||
'source': {'name': "DATALAB @Taxes A&M University", 'contact': 'mailto:khlai037@tamu.edu', | |||||
'uris': ['https://gitlab.com/lhenry15/tods/-/blob/Yile/anomaly-primitives/anomaly_primitives/AutoCorrelation.py']}, | |||||
'algorithm_types': [metadata_base.PrimitiveAlgorithmType.AUTOCORRELATION,], | |||||
'source': { | |||||
'name': "DATALAB @Taxes A&M University", | |||||
'contact': 'mailto:khlai037@tamu.edu', | |||||
}, | |||||
'version': '0.0.2', | |||||
'hyperparams_to_tune': ['unbiased', 'nlags', 'qstat', 'fft', 'alpha', 'missing'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | 'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | ||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'AutocorrelationPrimitive')), | 'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'AutocorrelationPrimitive')), | ||||
'hyperparams_to_tune': ['unbiased', 'nlags', 'qstat', 'fft', 'alpha', 'missing'], | |||||
'version': '0.0.2', | |||||
}) | }) | ||||
def __init__(self, *, | def __init__(self, *, | ||||
@@ -7,6 +7,7 @@ import sklearn | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -154,17 +155,21 @@ class BKFilterPrimitive(transformer.TransformerPrimitiveBase[Inputs, Outputs, Hy | |||||
Decides what semantic type to attach to generated attributes' | Decides what semantic type to attach to generated attributes' | ||||
""" | """ | ||||
__author__: "DATA Lab at Texas A&M University" | |||||
metadata = metadata_base.PrimitiveMetadata({ | metadata = metadata_base.PrimitiveMetadata({ | ||||
"__author__": "DATA Lab at Texas A&M University", | |||||
"name": "Baxter-King Filter Primitive", | "name": "Baxter-King Filter Primitive", | ||||
"python_path": "d3m.primitives.tods.feature_analysis.bk_filter", | "python_path": "d3m.primitives.tods.feature_analysis.bk_filter", | ||||
"source": {'name': 'DATA Lab at Texas A&M University', 'contact': 'mailto:khlai037@tamu.edu', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git', 'https://gitlab.com/lhenry15/tods/-/blob/Junjie/anomaly-primitives/anomaly_primitives/DuplicationValidation.py']}, | |||||
"algorithm_types": [metadata_base.PrimitiveAlgorithmType.BK_FILTER,], | |||||
"primitive_family": metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
"id": "b2bfadc5-dbca-482c-b188-8585e5f245c4", | |||||
"source": { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu', | |||||
}, | |||||
"hyperparams_to_tune": ['low', 'high', 'K'], | "hyperparams_to_tune": ['low', 'high', 'K'], | ||||
"version": "0.0.1", | "version": "0.0.1", | ||||
"algorithm_types": [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
"primitive_family": metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'BKFilterPrimitive')), | |||||
}) | }) | ||||
@@ -7,6 +7,7 @@ from d3m import container, utils | |||||
from d3m.base import utils as base_utils | from d3m.base import utils as base_utils | ||||
from d3m.metadata import base as metadata_base, hyperparams | from d3m.metadata import base as metadata_base, hyperparams | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
import uuid | |||||
import logging | import logging | ||||
import math | import math | ||||
@@ -212,27 +213,21 @@ class DiscreteCosineTransformPrimitive(transformer.TransformerPrimitiveBase[Inpu | |||||
""" | """ | ||||
__author__ = "Data Lab" | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
"__author__ " : "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__ " : "DATA Lab @ Texas A&M University", | |||||
'name': "Discrete Cosine Transform", | 'name': "Discrete Cosine Transform", | ||||
'python_path': 'd3m.primitives.tods.feature_analysis.discrete_cosine_transform', | 'python_path': 'd3m.primitives.tods.feature_analysis.discrete_cosine_transform', | ||||
'source': { | 'source': { | ||||
'name': 'DATA Lab at Texas A&M University', | 'name': 'DATA Lab at Texas A&M University', | ||||
'contact': 'mailto:khlai037@tamu.edu', | 'contact': 'mailto:khlai037@tamu.edu', | ||||
'uris': [ | |||||
'https://gitlab.com/lhenry15/tods.git', | |||||
'https://gitlab.com/lhenry15/tods/-/blob/purav/anomaly-primitives/anomaly_primitives/DiscreteCosineTransform.py', | |||||
], | |||||
}, | }, | ||||
'hyperparameters_to_tune':['n','norm','axis','type_'], | |||||
'version': '0.0.1', | |||||
'algorithm_types': [ | 'algorithm_types': [ | ||||
metadata_base.PrimitiveAlgorithmType.DISCRETE_COSINE_TRANSFORM, | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | ], | ||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | 'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | ||||
'id': '584fa7d5-39cc-4cf8-8d5b-5f3a2648f767', | |||||
'hyperparameters_to_tune':['n','norm','axis','type_'], | |||||
'version': '0.0.1', | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'DiscreteCosineTransformPrimitive')), | |||||
}, | }, | ||||
) | ) | ||||
@@ -7,6 +7,7 @@ from d3m import container, utils | |||||
from d3m.base import utils as base_utils | from d3m.base import utils as base_utils | ||||
from d3m.metadata import base as metadata_base, hyperparams | from d3m.metadata import base as metadata_base, hyperparams | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
import uuid | |||||
import logging | import logging | ||||
from cmath import polar | from cmath import polar | ||||
@@ -204,29 +205,22 @@ class FastFourierTransformPrimitive(transformer.TransformerPrimitiveBase[Inputs, | |||||
Decides what semantic type to attach to generated attributes' | Decides what semantic type to attach to generated attributes' | ||||
""" | """ | ||||
__author__ = "Data Lab" | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'__author__' : "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
'__author__' : "DATA Lab @ Texas A&M University", | |||||
'name': "Fast Fourier Transform", | 'name': "Fast Fourier Transform", | ||||
'python_path': 'd3m.primitives.tods.feature_analysis.fast_fourier_transform', | 'python_path': 'd3m.primitives.tods.feature_analysis.fast_fourier_transform', | ||||
'source': { | 'source': { | ||||
'name': 'DATA Lab at Texas A&M University', | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu', | 'contact': 'mailto:khlai037@tamu.edu', | ||||
'uris': [ | |||||
'https://gitlab.com/lhenry15/tods.git', | |||||
'https://gitlab.com/lhenry15/tods/-/blob/purav/anomaly-primitives/anomaly_primitives/FastFourierTransform.py', | |||||
], | |||||
}, | }, | ||||
'hyperparameters_to_tune':['n','norm','axis'], | |||||
'version': '0.0.1', | |||||
'algorithm_types': [ | 'algorithm_types': [ | ||||
metadata_base.PrimitiveAlgorithmType.FAST_FOURIER_TRANSFORM, | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | ], | ||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | 'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | ||||
'id': '7bd269bc-de7e-47b8-8d6c-0bd46594d3cb', | |||||
'hyperparameters_to_tune':['n','norm','axis'], | |||||
'version': '0.0.1', | |||||
}, | |||||
) | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'FastFourierTransformPrimitive')), | |||||
}) | |||||
def __init__(self, *, hyperparams: Hyperparams) -> None: | def __init__(self, *, hyperparams: Hyperparams) -> None: | ||||
super().__init__(hyperparams=hyperparams) | super().__init__(hyperparams=hyperparams) | ||||
@@ -7,6 +7,7 @@ import sklearn | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -131,17 +132,21 @@ class HPFilterPrimitive(transformer.TransformerPrimitiveBase[Inputs, Outputs, Hy | |||||
Decides what semantic type to attach to generated attributes' | Decides what semantic type to attach to generated attributes' | ||||
""" | """ | ||||
__author__: "DATA Lab at Texas A&M University" | |||||
metadata = metadata_base.PrimitiveMetadata({ | metadata = metadata_base.PrimitiveMetadata({ | ||||
"__author__": "DATA Lab at Texas A&M University", | |||||
"name": "Hodrick-Prescott filter Primitive", | "name": "Hodrick-Prescott filter Primitive", | ||||
"python_path": "d3m.primitives.tods.feature_analysis.hp_filter", | "python_path": "d3m.primitives.tods.feature_analysis.hp_filter", | ||||
"source": {'name': 'DATA Lab at Texas A&M University', 'contact': 'mailto:khlai037@tamu.edu', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git', 'https://gitlab.com/lhenry15/tods/-/blob/Junjie/anomaly-primitives/anomaly_primitives/DuplicationValidation.py']}, | |||||
"algorithm_types": [metadata_base.PrimitiveAlgorithmType.HP_FILTER,], | |||||
"primitive_family": metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
"id": "3af1be06-e45e-4ead-8523-4373264598e4", | |||||
"source": { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu', | |||||
}, | |||||
"hyperparams_to_tune": ['lamb'], | "hyperparams_to_tune": ['lamb'], | ||||
"version": "0.0.1", | "version": "0.0.1", | ||||
"algorithm_types": [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
"primitive_family": metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'HPFilterPrimitive')), | |||||
}) | }) | ||||
@@ -7,6 +7,7 @@ from d3m.primitive_interfaces.base import CallResult, DockerContainer | |||||
from typing import cast, Dict, List, Union, Sequence, Optional, Tuple | from typing import cast, Dict, List, Union, Sequence, Optional, Tuple | ||||
from collections import OrderedDict | from collections import OrderedDict | ||||
from scipy import sparse | from scipy import sparse | ||||
import uuid | |||||
import nimfa | import nimfa | ||||
import pandas as pd | import pandas as pd | ||||
@@ -266,29 +267,22 @@ class NonNegativeMatrixFactorizationPrimitive(transformer.TransformerPrimitiveBa | |||||
__author__ = "Data Lab" | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'__author__' : "DATA Lab at Texas A&M University", | |||||
'name': "Fast Fourier Transform", | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.non_negative_matrix_factorization', | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
'__author__' : "DATA Lab @ Texas A&M University", | |||||
'name': "Fast Fourier Transform", | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.non_negative_matrix_factorization', | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu', | 'contact': 'mailto:khlai037@tamu.edu', | ||||
'uris': [ | |||||
'https://gitlab.com/lhenry15/tods.git', | |||||
'https://gitlab.com/lhenry15/tods/-/blob/purav/anomaly-primitives/anomaly_primitives/NonNegativeMatrixFactorization.py', | |||||
], | |||||
}, | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.NON_NEGATIVE_MATRIX_FACTORIZATION, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': 'c7259da6-7ce6-42ad-83c6-15238679f5fa', | |||||
'hyperparameters_to_tune':['rank','update','objective','max_iter','learning_rate'], | |||||
'version': '0.0.1', | |||||
}, | |||||
) | |||||
}, | |||||
'hyperparameters_to_tune':['rank','update','objective','max_iter','learning_rate'], | |||||
'version': '0.0.1', | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'NonNegativeMatrixFactorizationPrimitive')), | |||||
}) | |||||
def __init__(self, *, hyperparams: Hyperparams) -> None: | def __init__(self, *, hyperparams: Hyperparams) -> None: | ||||
super().__init__(hyperparams=hyperparams) | super().__init__(hyperparams=hyperparams) | ||||
@@ -7,6 +7,7 @@ import sklearn | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
# Custom import commands if any | # Custom import commands if any | ||||
from sklearn.decomposition.truncated_svd import TruncatedSVD | from sklearn.decomposition.truncated_svd import TruncatedSVD | ||||
@@ -156,17 +157,21 @@ class SKTruncatedSVDPrimitive(UnsupervisedLearnerPrimitiveBase[Inputs, Outputs, | |||||
Decides what semantic type to attach to generated attributes' | Decides what semantic type to attach to generated attributes' | ||||
""" | """ | ||||
__author__: "DATA Lab at Texas A&M University" | |||||
metadata = metadata_base.PrimitiveMetadata({ | metadata = metadata_base.PrimitiveMetadata({ | ||||
"name": "Truncated SVD", | |||||
"python_path": "d3m.primitives.tods.feature_analysis.truncated_svd", | |||||
"source": {'name': 'DATA Lab at Texas A&M University', 'contact': 'mailto:khlai037@tamu.edu', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git', 'https://gitlab.com/lhenry15/tods/-/blob/Junjie/anomaly-primitives/anomaly_primitives/SKTruncatedSVD.py']}, | |||||
"algorithm_types": [metadata_base.PrimitiveAlgorithmType.SINGULAR_VALUE_DECOMPOSITION, ], | |||||
"primitive_family": metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
"id": "9231fde3-7322-3c41-b4cf-d00a93558c44", | |||||
"hyperparams_to_tune": ['n_components', 'algorithm', 'use_columns', 'exclude_columns', 'return_result', 'use_semantic_types', 'add_index_columns', 'error_on_no_input', 'return_semantic_type'], | |||||
"version": "0.0.1", | |||||
"__author__": "DATA Lab at Texas A&M University", | |||||
"name": "Truncated SVD", | |||||
"python_path": "d3m.primitives.tods.feature_analysis.truncated_svd", | |||||
"source": { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu', | |||||
}, | |||||
"hyperparams_to_tune": ['n_components', 'algorithm', 'use_columns', 'exclude_columns', 'return_result', 'use_semantic_types', 'add_index_columns', 'error_on_no_input', 'return_semantic_type'], | |||||
"version": "0.0.1", | |||||
"algorithm_types": [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
"primitive_family": metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'SKTruncatedSVDPrimitive')), | |||||
}) | }) | ||||
def __init__(self, *, | def __init__(self, *, | ||||
@@ -9,6 +9,7 @@ from numpy import ndarray | |||||
from collections import OrderedDict | from collections import OrderedDict | ||||
from scipy import sparse | from scipy import sparse | ||||
import os | import os | ||||
import uuid | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
@@ -90,36 +91,24 @@ class SpectralResidualTransformPrimitive(transformer.TransformerPrimitiveBase[In | |||||
""" | """ | ||||
Primitive to find Spectral Residual Transform of time series | Primitive to find Spectral Residual Transform of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '88dda04b-090b-49a5-8035-279eb3be9cd9', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Spectral Residual', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.spectral_residual_transform', | |||||
'keywords': ['Time Series','FFT'], | |||||
"hyperparams_to_tune": ['avg_filter_dimension'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/SpectralResidualTransform.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Spectral Residual', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.spectral_residual_transform', | |||||
'keywords': ['Time Series','FFT'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
"hyperparams_to_tune": ['avg_filter_dimension'], | |||||
'version': '0.1.0', | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'SpectralResidualTransformPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -9,6 +9,7 @@ from numpy import ndarray | |||||
from collections import OrderedDict | from collections import OrderedDict | ||||
from scipy import sparse | from scipy import sparse | ||||
import os | import os | ||||
import uuid | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
@@ -92,35 +93,24 @@ class StatisticalAbsEnergyPrimitive(transformer.TransformerPrimitiveBase[Inputs, | |||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | __author__ = "DATA Lab at Texas A&M University", | ||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '73299ffe-d8bb-43c6-a6cc-9261f5e17a5e', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Statistical Abs Energy', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_abs_energy', | |||||
'keywords': ['Time Series','AbsEnergy'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalAbsEnergy.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Statistical Abs Energy', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_abs_energy', | |||||
'keywords': ['Time Series','AbsEnergy'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'version': '0.1.0', | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalAbsEnergyPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -9,6 +9,7 @@ from numpy import ndarray | |||||
from collections import OrderedDict | from collections import OrderedDict | ||||
from scipy import sparse | from scipy import sparse | ||||
import os | import os | ||||
import uuid | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
@@ -90,36 +91,23 @@ class StatisticalAbsSumPrimitive(transformer.TransformerPrimitiveBase[Inputs, Ou | |||||
""" | """ | ||||
Primitive to find abs_sum of time series | Primitive to find abs_sum of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': 'fbc10e6f-d75b-4815-b4c8-5ad4f2f577db', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Absolute Sum', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_abs_sum', | |||||
'keywords': ['Time Series','AbsSum'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalAbsSum.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Absolute Sum', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_abs_sum', | |||||
'keywords': ['Time Series','AbsSum'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'version': '0.1.0', | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalAbsSumPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -10,7 +10,7 @@ from collections import OrderedDict | |||||
from scipy import sparse | from scipy import sparse | ||||
import os | import os | ||||
from scipy import stats | from scipy import stats | ||||
import uuid | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
@@ -93,36 +93,23 @@ class StatisticalGmeanPrimitive(transformer.TransformerPrimitiveBase[Inputs, Out | |||||
Primitive to find gmean of time series . | Primitive to find gmean of time series . | ||||
Will only take positive values as inputs . | Will only take positive values as inputs . | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '6be88a7d-e72d-45c6-bd3b-3191d4eff623', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_g_mean', | |||||
'keywords': ['Time Series','Gmean'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalGmean.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_g_mean', | |||||
'keywords': ['Time Series','Gmean'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'version': '0.1.0', | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalGmeanPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -10,6 +10,7 @@ from collections import OrderedDict | |||||
from scipy import sparse | from scipy import sparse | ||||
import os | import os | ||||
from scipy import stats | from scipy import stats | ||||
import uuid | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
@@ -93,35 +94,24 @@ class StatisticalHmeanPrimitive(transformer.TransformerPrimitiveBase[Inputs, Out | |||||
Harmonic mean only defined if all elements greater than or equal to zero | Harmonic mean only defined if all elements greater than or equal to zero | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | __author__ = "DATA Lab at Texas A&M University", | ||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '7c4bf669-26f4-4756-8e00-c3e5e89fa43c', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_h_mean', | |||||
'keywords': ['Time Series','Hmean'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalHmean.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_h_mean', | |||||
'keywords': ['Time Series','Hmean'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalHmeanPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -10,6 +10,7 @@ from collections import OrderedDict | |||||
from scipy import sparse | from scipy import sparse | ||||
import os | import os | ||||
from scipy import stats | from scipy import stats | ||||
import uuid | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
@@ -91,36 +92,23 @@ class StatisticalKurtosisPrimitive(transformer.TransformerPrimitiveBase[Inputs, | |||||
""" | """ | ||||
Primitive to find kurtosis of time series | Primitive to find kurtosis of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': 'c86af521-05b6-4f7c-a7b9-929318d944fc', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_kurtosis', | |||||
'keywords': ['Time Series','Kurtosis'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalKurtosis.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_kurtosis', | |||||
'keywords': ['Time Series','Kurtosis'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalKurtosisPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -91,35 +92,23 @@ class StatisticalMaximumPrimitive(transformer.TransformerPrimitiveBase[Inputs, O | |||||
Primitive to find maximum of time series | Primitive to find maximum of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | __author__ = "DATA Lab at Texas A&M University", | ||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '3b448057-ac26-4f1b-96b6-141782f16a54', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_maximum', | |||||
'keywords': ['Time Series','Maximum'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalMaximum.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_maximum', | |||||
'keywords': ['Time Series','Maximum'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'version': '0.1.0', | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalMaximumPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -90,36 +91,24 @@ class StatisticalMeanPrimitive(transformer.TransformerPrimitiveBase[Inputs, Outp | |||||
""" | """ | ||||
Primitive to find mean of time series | Primitive to find mean of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': 'eaff2f35-978c-4530-a12e-061a5f0beacd', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_mean', | |||||
'keywords': ['Time Series','Mean'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalMean.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_mean', | |||||
'keywords': ['Time Series','Mean'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalMeanPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -90,36 +91,23 @@ class StatisticalMeanAbsPrimitive(transformer.TransformerPrimitiveBase[Inputs, O | |||||
""" | """ | ||||
Primitive to find mean_abs of time series | Primitive to find mean_abs of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': 'c397f0b2-45da-4263-8cca-b4e1a9502918', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_mean_abs', | |||||
'keywords': ['Time Series','MeanAbs'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalMeanAbs.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_mean_abs', | |||||
'keywords': ['Time Series','MeanAbs'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalMeanAbsPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -9,6 +9,7 @@ from numpy import ndarray | |||||
from collections import OrderedDict | from collections import OrderedDict | ||||
from scipy import sparse | from scipy import sparse | ||||
import os | import os | ||||
import uuid | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
@@ -90,36 +91,24 @@ class StatisticalMeanAbsTemporalDerivativePrimitive(transformer.TransformerPrimi | |||||
""" | """ | ||||
Primitive to find mean_abs_temporal_derivative of time series | Primitive to find mean_abs_temporal_derivative of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': 'eb571238-6229-4fe4-94b3-684f043e4dbf', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_mean_abs_temporal_derivative', | |||||
'keywords': ['Time Series','MeanAbsTemporalDerivative'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalMeanAbsTemporalDerivative.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_mean_abs_temporal_derivative', | |||||
'keywords': ['Time Series','MeanAbsTemporalDerivative'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalMeanAbsTemporalDerivativePrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -90,36 +91,24 @@ class StatisticalMeanTemporalDerivativePrimitive(transformer.TransformerPrimitiv | |||||
""" | """ | ||||
Primitive to find mean_temporal_derivative of time series | Primitive to find mean_temporal_derivative of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': 'bc051fbb-836b-414e-ad3e-5bf29c9f78f1', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_mean_temporal_derivative', | |||||
'keywords': ['Time Series','MeanTemporalDerivative'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalMeanTemporalDerivative.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_mean_temporal_derivative', | |||||
'keywords': ['Time Series','MeanTemporalDerivative'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalMeanTemporalDerivativePrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -90,36 +91,24 @@ class StatisticalMedianPrimitive(transformer.TransformerPrimitiveBase[Inputs, Ou | |||||
""" | """ | ||||
Primitive to find median of time series | Primitive to find median of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '9f05a450-c1f0-49f6-971b-dcc3789174d0', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_median', | |||||
'keywords': ['Time Series','Median'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalMedian.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_median', | |||||
'keywords': ['Time Series','Median'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'version': '0.1.0', | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalMedianPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -14,6 +14,7 @@ from scipy import stats | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -91,36 +92,24 @@ class StatisticalMedianAbsoluteDeviationPrimitive(transformer.TransformerPrimiti | |||||
""" | """ | ||||
Primitive to find median_absolute_deviation of time series | Primitive to find median_absolute_deviation of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '36e7d739-72c3-4e6e-91b8-b2b64cbe4e12', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_median_abs_deviation', | |||||
'keywords': ['Time Series','MedianAbsoluteDeviation'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalMedianAbsoluteDeviation.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_median_abs_deviation', | |||||
'keywords': ['Time Series','MedianAbsoluteDeviation'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalMedianAbsoluteDeviationPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -90,36 +91,24 @@ class StatisticalMinimumPrimitive(transformer.TransformerPrimitiveBase[Inputs, O | |||||
""" | """ | ||||
Primitive to find minimum of time series | Primitive to find minimum of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '255955d0-1d64-433b-b9f0-e2a1b679be45', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_minimum', | |||||
'keywords': ['Time Series','Minimum'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalMinimum.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_minimum', | |||||
'keywords': ['Time Series','Minimum'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalMinimumPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -14,6 +14,7 @@ from scipy import stats | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -91,36 +92,24 @@ class StatisticalSkewPrimitive(transformer.TransformerPrimitiveBase[Inputs, Outp | |||||
""" | """ | ||||
Primitive to find skew of time series | Primitive to find skew of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': 'cd154af5-8f98-480a-8a72-6a22365c3c6f', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_skew', | |||||
'keywords': ['Time Series','Skew'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalSkew.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_skew', | |||||
'keywords': ['Time Series','Skew'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalSkewPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -90,36 +91,24 @@ class StatisticalStdPrimitive(transformer.TransformerPrimitiveBase[Inputs, Outpu | |||||
""" | """ | ||||
Primitive to find std of time series | Primitive to find std of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '652fc98a-8bd9-45a2-8005-dc781bf0c136', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_std', | |||||
'keywords': ['Time Series','Std'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalStd.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_std', | |||||
'keywords': ['Time Series','Std'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalStdPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -90,36 +91,23 @@ class StatisticalVarPrimitive(transformer.TransformerPrimitiveBase[Inputs, Outpu | |||||
""" | """ | ||||
Primitive to find var of time series | Primitive to find var of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '9b237f3f-c638-44f4-adb1-f3f24a173711', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_var', | |||||
'keywords': ['Time Series','Var'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalVar.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_var', | |||||
'keywords': ['Time Series','Var'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalVarPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -14,6 +14,7 @@ from scipy import stats | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -91,36 +92,25 @@ class StatisticalVariationPrimitive(transformer.TransformerPrimitiveBase[Inputs, | |||||
""" | """ | ||||
Primitive to find variation of time series | Primitive to find variation of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': 'ea6e852f-164b-4245-b5e6-02fde55c5491', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_variation', | |||||
'keywords': ['Time Series','Variation'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalVariation.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_variation', | |||||
'keywords': ['Time Series','Variation'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalVariationPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -90,36 +91,24 @@ class StatisticalVecSumPrimitive(transformer.TransformerPrimitiveBase[Inputs, Ou | |||||
""" | """ | ||||
Primitive to find vec_sum of time series | Primitive to find vec_sum of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': 'a5ff2fc8-657e-4c4f-8a4e-6949dd37bf9c', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_vec_sum', | |||||
'keywords': ['Time Series','VecSum'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalVecSum.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_vec_sum', | |||||
'keywords': ['Time Series','VecSum'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalVecSumPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -94,36 +95,24 @@ class StatisticalWillisonAmplitudePrimitive(transformer.TransformerPrimitiveBase | |||||
""" | """ | ||||
Primitive to find willison amplitude of time series | Primitive to find willison amplitude of time series | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': 'f1dee9fb-7e3b-499d-a559-7979fa4a2e1c', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_willison_amplitude', | |||||
'keywords': ['Time Series','WillisonAmplitude'], | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalWillisonAmplitude.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_willison_amplitude', | |||||
'keywords': ['Time Series','WillisonAmplitude'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
"hyperparams_to_tune": ['window_size'], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalWillisonAmplitudePrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -13,6 +13,7 @@ import os | |||||
import numpy | import numpy | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
from d3m import container | from d3m import container | ||||
from d3m.primitive_interfaces import base, transformer | from d3m.primitive_interfaces import base, transformer | ||||
@@ -86,35 +87,23 @@ class StatisticalZeroCrossingPrimitive(transformer.TransformerPrimitiveBase[Inpu | |||||
""" | """ | ||||
Primitive to find zero_crossing of time series. A column indicating zero crossing on ith row . 1 indicates crossing 0 is for normal | Primitive to find zero_crossing of time series. A column indicating zero crossing on ith row . 1 indicates crossing 0 is for normal | ||||
""" | """ | ||||
__author__ = "DATA Lab at Texas A&M University", | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
'id': '1064c78f-37e2-45a1-94a3-401a6726c220', | |||||
'version': '0.1.0', | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_zero_crossing', | |||||
'keywords': ['Time Series','ZeroCrossing'], | |||||
'source': { | |||||
'name': 'DATA Lab at Texas A&M University', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git','https://gitlab.com/lhenry15/tods/-/blob/devesh/tods/feature_analysis/StatisticalZeroCrossing.py'], | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'installation': [ | |||||
{'type': metadata_base.PrimitiveInstallationType.PIP, | |||||
'package_uri': 'git+https://gitlab.com/lhenry15/tods.git@{git_commit}#egg=TODS'.format( | |||||
git_commit=d3m_utils.current_git_commit(os.path.dirname(__file__)), | |||||
), | |||||
} | |||||
], | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.DATA_PROFILING, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
} | |||||
) | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
'name': 'Time Series Decompostional', | |||||
'python_path': 'd3m.primitives.tods.feature_analysis.statistical_zero_crossing', | |||||
'keywords': ['Time Series','ZeroCrossing'], | |||||
'source': { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu' | |||||
}, | |||||
'version': '0.1.0', | |||||
'algorithm_types': [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
'primitive_family': metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'StatisticalZeroCrossingPrimitive')), | |||||
}) | |||||
def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | def produce(self, *, inputs: Inputs, timeout: float = None, iterations: int = None) -> base.CallResult[Outputs]: | ||||
""" | """ | ||||
@@ -7,6 +7,7 @@ import sklearn | |||||
import numpy as np | import numpy as np | ||||
import typing | import typing | ||||
import time | import time | ||||
import uuid | |||||
# Custom import commands if any | # Custom import commands if any | ||||
from sklearn.decomposition.truncated_svd import TruncatedSVD | from sklearn.decomposition.truncated_svd import TruncatedSVD | ||||
@@ -222,17 +223,21 @@ class TRMFPrimitive(transformer.TransformerPrimitiveBase[Inputs, Outputs, Hyperp | |||||
Which can be found there: http://www.cs.utexas.edu/~rofuyu/papers/tr-mf-nips.pdf | Which can be found there: http://www.cs.utexas.edu/~rofuyu/papers/tr-mf-nips.pdf | ||||
""" | """ | ||||
__author__: "DATA Lab at Texas A&M University" | |||||
metadata = metadata_base.PrimitiveMetadata({ | metadata = metadata_base.PrimitiveMetadata({ | ||||
"name": "Temporal Regularized Matrix Factorization Primitive", | |||||
"python_path": "d3m.primitives.tods.feature_analysis.trmf", | |||||
"source": {'name': 'DATA Lab at Texas A&M University', 'contact': 'mailto:khlai037@tamu.edu', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git', 'https://gitlab.com/lhenry15/tods/-/blob/Junjie/anomaly-primitives/anomaly_primitives/TRMF.py']}, | |||||
"algorithm_types": [metadata_base.PrimitiveAlgorithmType.TEMPORAL_REGULARIZED_MATRIX_FACTORIZATION, ], | |||||
"primitive_family": metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
"id": "d6be6941-61d0-4cbd-85ef-a10c86aa40b1", | |||||
"hyperparams_to_tune": ['lags', 'K', 'lambda_f', 'lambda_x', 'lambda_w', 'alpha', 'eta', 'max_iter', 'F_step', 'X_step', 'W_step'], | |||||
"version": "0.0.1", | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
"name": "Temporal Regularized Matrix Factorization Primitive", | |||||
"python_path": "d3m.primitives.tods.feature_analysis.trmf", | |||||
"source": { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu', | |||||
}, | |||||
"version": "0.0.1", | |||||
"hyperparams_to_tune": ['lags', 'K', 'lambda_f', 'lambda_x', 'lambda_w', 'alpha', 'eta', 'max_iter', 'F_step', 'X_step', 'W_step'], | |||||
"algorithm_types": [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
"primitive_family": metadata_base.PrimitiveFamily.FEATURE_CONSTRUCTION, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'TRMFPrimitive')), | |||||
}) | }) | ||||
@@ -174,20 +174,22 @@ class WaveletTransformPrimitive(transformer.TransformerPrimitiveBase[Inputs, Out | |||||
None | None | ||||
""" | """ | ||||
__author__ = "DATALAB @Taxes A&M University" | |||||
metadata = metadata_base.PrimitiveMetadata( | |||||
{ | |||||
"name": "Wavelet_transformation", | |||||
"python_path": "d3m.primitives.tods.feature_analysis.wavelet_transform", | |||||
"source": {'name': "DATALAB @Taxes A&M University", 'contact': 'mailto:khlai037@tamu.edu', | |||||
'uris': ['https://gitlab.com/lhenry15/tods.git']}, | |||||
"algorithm_types": [metadata_base.PrimitiveAlgorithmType.FREQUENCY_TRANSFORM, ], | |||||
"primitive_family": metadata_base.PrimitiveFamily.FEATURE_EXTRACTION, | |||||
"version": "0.0.1", | |||||
"hyperparams_to_tune": ['wavelet', 'mode', 'axis', 'level'], | |||||
"id": str(uuid.uuid3(uuid.NAMESPACE_DNS, 'WaveletTransformer')), | |||||
metadata = metadata_base.PrimitiveMetadata({ | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
"name": "Wavelet_transformation", | |||||
"python_path": "d3m.primitives.tods.feature_analysis.wavelet_transform", | |||||
"source": { | |||||
'name': "DATA Lab @ Taxes A&M University", | |||||
'contact': 'mailto:khlai037@tamu.edu', | |||||
}, | }, | ||||
) | |||||
"version": "0.0.1", | |||||
"hyperparams_to_tune": ['wavelet', 'mode', 'axis', 'level'], | |||||
"algorithm_types": [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
"primitive_family": metadata_base.PrimitiveFamily.FEATURE_EXTRACTION, | |||||
"id": str(uuid.uuid3(uuid.NAMESPACE_DNS, 'WaveletTransformer')), | |||||
}) | |||||
def __init__(self, *, hyperparams: Hyperparams) -> None: | def __init__(self, *, hyperparams: Hyperparams) -> None: | ||||
super().__init__(hyperparams=hyperparams) # , random_seed=random_seed, docker_containers=docker_containers) | super().__init__(hyperparams=hyperparams) # , random_seed=random_seed, docker_containers=docker_containers) | ||||
@@ -112,20 +112,20 @@ class HoltSmoothingPrimitive(UnsupervisedLearnerPrimitiveBase[Inputs, Outputs, P | |||||
""" | """ | ||||
metadata = metadata_base.PrimitiveMetadata({ | metadata = metadata_base.PrimitiveMetadata({ | ||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
"name": "statsmodels.preprocessing.HoltSmoothing", | |||||
"python_path": "d3m.primitives.tods.timeseries_processing.transformation.holt_smoothing", | |||||
"source": { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu', | |||||
}, | |||||
"version": "0.0.1", | |||||
"hyperparams_to_tune": ['endog','use_columns'], | |||||
"algorithm_types": [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
"primitive_family": metadata_base.PrimitiveFamily.DATA_PREPROCESSING, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'HoltSmoothingPrimitive')), | |||||
"__author__": "DATA Lab @ Texas A&M University", | |||||
"name": "statsmodels.preprocessing.HoltSmoothing", | |||||
"python_path": "d3m.primitives.tods.timeseries_processing.transformation.holt_smoothing", | |||||
"source": { | |||||
'name': 'DATA Lab @ Texas A&M University', | |||||
'contact': 'mailto:khlai037@tamu.edu', | |||||
}, | |||||
"version": "0.0.1", | |||||
"hyperparams_to_tune": ['endog','use_columns'], | |||||
"algorithm_types": [ | |||||
metadata_base.PrimitiveAlgorithmType.TODS_PRIMITIVE, | |||||
], | |||||
"primitive_family": metadata_base.PrimitiveFamily.DATA_PREPROCESSING, | |||||
'id': str(uuid.uuid3(uuid.NAMESPACE_DNS, 'HoltSmoothingPrimitive')), | |||||
}) | }) | ||||
def __init__(self, *, | def __init__(self, *, | ||||