From 6db178c26280cdfc88fea4dc043accca90239d3f Mon Sep 17 00:00:00 2001 From: lhenry15 Date: Thu, 17 Jun 2021 23:38:48 -0500 Subject: [PATCH] merge from benchmark branch --- benchmark/README.md | 8 - benchmark/realworld_data/README.md | 51 --- benchmark/realworld_data/build_pipelines.sh | 26 -- benchmark/realworld_data/data/script/cicids.py | 43 --- benchmark/realworld_data/data/script/creditcard.py | 28 -- benchmark/realworld_data/data/script/gecco.py | 31 -- .../data/script/raw_data/put_data_here | 0 benchmark/realworld_data/data/script/swan_sf.py | 44 --- .../neural/build_AE_pipeline.py | 78 ---- .../neural/build_RNNLSTM_pipeline.py | 78 ---- .../pipeline_construction_simple.py | 183 ---------- .../pipeline_construction_subseq.py | 183 ---------- .../pipelines/AE/creditcard/ae_pipeline_0.01.json | 1 - .../pipelines/AE/creditcard/ae_pipeline_0.05.json | 1 - .../pipelines/AE/creditcard/ae_pipeline_0.1.json | 1 - .../pipelines/AE/creditcard/ae_pipeline_0.15.json | 1 - 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+++ /dev/null @@ -1,8 +0,0 @@ - -# Revisiting Time Series Outlier Detection: Definitions and Benchmarks - -## Benchmark Directions -* Step1: Follow the instructions in main page to intall the package -* Step2: Go to the sub-directories (realworld\_data or synthetic) to see the detailed instruction for running the benchmarking pipelines. - - diff --git a/benchmark/realworld_data/README.md b/benchmark/realworld_data/README.md deleted file mode 100644 index 802fbee..0000000 --- a/benchmark/realworld_data/README.md +++ /dev/null @@ -1,51 +0,0 @@ -# Revisiting Time Series Outlier Detection:Definitions and Benchmarks - -This branch is the source code of experiment part of our paper. We provide everything needed when running the experiments: Dataset, Dataset Generator, Pipeline json, Python script, runner and the result (in "./result") we get from the experiments. - -## Resources -* Paper: Under review - - -## Datasets -To get the dataset, please go to "data/script" to run all of the python scripts. They will download and preprocess the data automatically into "data/" folder. - - -## Pipeline - -This Pipeline json files are organized by different settings of algorithms. - -## Runner - -To run a pipeline, you can generate your own pipeline json file from script. - -```python -sh build_pipelines.sh -``` - -Then run the pipeline with run\_pipeline.py (Below is the example for running IForest on GECCO dataset) -```python -python run_pipeline.py --pipeline_path pipelines/simple/pyod_iforest_0.01.json --data_path ./data/water_quality.csv -``` - - - -Or you can directly use the pipelines we have generated in /pipelines with bash script: - -```python -sh run.sh -``` - - -## Cite this Work: -If you find this work useful, you may cite this work: -``` -@misc{lai2020tods, - title={TODS: An Automated Time Series Outlier Detection System}, - author={Kwei-Harng Lai and Daochen Zha and Guanchu Wang and Junjie Xu and Yue Zhao and Devesh Kumar and Yile Chen and Purav Zumkhawaka and Minyang Wan and Diego Martinez and Xia Hu}, - year={2020}, - eprint={2009.09822}, - archivePrefix={arXiv}, - primaryClass={cs.DB} -} -``` -*Please refer master branch of TODS for details of running pipelines. diff --git a/benchmark/realworld_data/build_pipelines.sh b/benchmark/realworld_data/build_pipelines.sh deleted file mode 100644 index 861976c..0000000 --- a/benchmark/realworld_data/build_pipelines.sh +++ /dev/null @@ -1,26 +0,0 @@ -#!/bin/bash - -if [ ! -d "./pipelines/simple" ]; then - mkdir -p ./pipelines/simple -fi -if [ ! -d "./pipelines/subseq" ]; then - mkdir -p ./pipelines/subseq -fi -python pipeline_construction/pipeline_construction_simple.py -python pipeline_construction/pipeline_construction_subseq.py - -data="swan_sf creditcard web_attack water_quality" -for d in $data -do - if [ ! -d "./pipelines/AE/$d" ]; then - mkdir -p ./pipelines/AE/$d - fi - if [ ! -d "./pipelines/RNN_LSTM/$d" ]; then - mkdir -p ./pipelines/RNN_LSTM/$d - fi - - python pipeline_construction/neural/build_AE_pipeline.py "./data/"$d".csv" - python pipeline_construction/neural/build_RNNLSTM_pipeline.py "./data/"$d".csv" -done - - diff --git a/benchmark/realworld_data/data/script/cicids.py b/benchmark/realworld_data/data/script/cicids.py deleted file mode 100644 index 15cbc1d..0000000 --- a/benchmark/realworld_data/data/script/cicids.py +++ /dev/null @@ -1,43 +0,0 @@ -import pandas as pd -import numpy as np -import os -import requests - - -def preprocess_web_attack(): - def get_data(): - link="http://205.174.165.80/CICDataset/CIC-IDS-2017/Dataset/MachineLearningCSV.zip" - r = requests.get(link) - with open('./raw_data/cicids.zip', 'wb') as f: - f.write(r.content) - os.system("unzip ./raw_data/cicids.zip -d ./raw_data") - os.system("mv ./raw_data/MachineLearningCSV/Thursday-WorkingHours-Morning-WebAttacks.pcap_ISCX.csv ./raw_data/cicids.csv") - os.system("rm -r MachineLearningCSV") - os.system("rm cicids.zip") - - if get_data == True: - get_data() - #df = pd.read_csv("./raw_data/MachineLearningCSV/Thursday-WorkingHours-Morning-WebAttacks.pcap_ISCX.csv") - df = pd.read_csv("./raw_data/cicids.csv") - - df.replace([float('inf'), 'Infinity',''], np.nan, inplace=True) - df = df.dropna() - #df = df.sample(frac=0.05, replace=False, random_state=1) - df[' Timestamp'] = pd.to_datetime(df[' Timestamp'], infer_datetime_format=True) - df = df.sort_values(by=[' Timestamp']) - - # drop nan and str columns - drop_cols = list(df.columns)[0:5] - drop_cols = list(df.columns)[0:5] - drop_cols.append(list(df.columns)[6]) - df = df.drop(columns=drop_cols) - - # relabeing and put label in the first column - df[' Label'] = df[' Label'].map({'BENIGN':"0", "Web Attack Brute Force": "1","Web Attack Sql Injection": "1", "Web Attack XSS": "1"}) - cols = df.columns.tolist() - cols = cols[-1:] + cols[:-1] - df = df[cols] - df.to_csv("../web_attack.csv", index=False, encoding='utf-8') - -if __name__ == "__main__": - preprocess_web_attack() diff --git a/benchmark/realworld_data/data/script/creditcard.py b/benchmark/realworld_data/data/script/creditcard.py deleted file mode 100644 index 5917d00..0000000 --- a/benchmark/realworld_data/data/script/creditcard.py +++ /dev/null @@ -1,28 +0,0 @@ -import pandas as pd -import os -import requests - -def preprocess_creditcard(): - def get_data(): - link="https://www.openml.org/data/get_csv/1673544/phpKo8OWT" - r = requests.get(link) - with open('./raw_data/openml_creditcard.csv', 'wb') as f: - f.write(r.content) - - get_data() - df = pd.read_csv("./raw_data/openml_creditcard.csv") - # drop nan and str columns - df = df.dropna() - #df = df.drop(columns=['Time']) - cols = df.columns.tolist() - cols = cols[-1:] + cols[:-1] - df = df[cols] - #df['Class'] = df['Class'].map({0:"nominal", 1: "anomaly"}) - #df = df.sample(frac=0.025, replace=False, random_state=1) - df = df.sort_values(by=['Time']) - df = df.drop(columns=['Time']) - df['Class'] = df['Class'].str.replace(r'\'', '').astype(int) - df.to_csv("../creditcard.csv", index=False, encoding='utf-8') - -if __name__ == "__main__": - preprocess_creditcard() diff --git a/benchmark/realworld_data/data/script/gecco.py b/benchmark/realworld_data/data/script/gecco.py deleted file mode 100644 index 9d7fe0c..0000000 --- a/benchmark/realworld_data/data/script/gecco.py +++ /dev/null @@ -1,31 +0,0 @@ -import pandas as pd -import os -import requests - -def preprocess_gecco(): - def get_data(): - link="https://ndownloader.figshare.com/articles/12451142/versions/1" - r = requests.get(link) - with open('./raw_data/gecco.zip', 'wb') as f: - f.write(r.content) - os.system("unzip ./raw_data/gecco.zip -d ./raw_data") - os.system("rm ./raw_data/*.pdf ./raw_data/4_ResourcePackage_GECCO_Industrial_Challenge_2018.zip") - - get_data() - df = pd.read_csv("./raw_data/1_gecco2018_water_quality.csv") - # drop nan and str columns - df = df.dropna() - df = df.drop(columns=['Time', df.columns[0]]) - cols = df.columns.tolist() - cols = cols[-1:] + cols[:-1] - df = df[cols] - df['EVENT'] = df['EVENT'].map({False:"0", True: "1"}) - df = df.rename(columns={"EVENT": "label"}) - #df['Class'] = df['Class'].map({0:"nominal", 1: "anomaly"}) - #df = df.sample(frac=0.025, replace=False, random_state=1) - #df = df.sort_values(by=['Time']) - #df = df.drop(columns=['Time']) - df.to_csv("../water_quality.csv", index=False, encoding='utf-8') - -if __name__ == "__main__": - preprocess_gecco() diff --git a/benchmark/realworld_data/data/script/raw_data/put_data_here b/benchmark/realworld_data/data/script/raw_data/put_data_here deleted file mode 100644 index e69de29..0000000 diff --git a/benchmark/realworld_data/data/script/swan_sf.py b/benchmark/realworld_data/data/script/swan_sf.py deleted file mode 100644 index 66c0507..0000000 --- a/benchmark/realworld_data/data/script/swan_sf.py +++ /dev/null @@ -1,44 +0,0 @@ -import pandas as pd -import os -import requests - -def get_data(): - link="https://bitbucket.org/gsudmlab/mvtsdata_toolkit/downloads/petdataset_01.zip" - r = requests.get(link) - with open('./swan_sf.zip', 'wb') as f: - f.write(r.content) - os.system("unzip swan_sf.zip") - -def read_labeled_data(): - dir_path = "./petdataset_01" - files = os.listdir(dir_path) - inlier = [] - label = {} - for f in files: - #if "csv" not in f and "NF" not in f: - if "csv" not in f: - continue - label = f.split("lab[")[1].split("]")[0] - #print(label) - f_path = os.path.join(dir_path, f) - df = pd.read_csv(f_path, header=0, sep='\t') - df['label'] = label - inlier.append(df) - df = pd.concat(inlier, axis=0, ignore_index=True) - df = df.sort_values(by=['Timestamp']) - drop_cols = [col for col in df.columns if "label" in col or "loc" in col or "Timestamp" in col][:-1] - df = df.drop(columns=drop_cols) - df.reset_index(drop=True, inplace=True) - df = df.fillna(method='ffill') - df = df.dropna(axis="columns") - df['label'].replace({"NF":0, "C":1, "B":1, "M":1, "X":1}, inplace=True) - df['IS_TMFI'].replace({True:1, False:0}, inplace=True) - cols = df.columns.tolist() - cols = cols[-1:] + cols[:-1] - df = df[cols] - df.to_csv("../swan_sf.csv", index=False) - -if __name__ == "__main__": - get_data() - read_labeled_data() - os.system("rm -rf swan_sf.zip petdataset_01") diff --git a/benchmark/realworld_data/pipeline_construction/neural/build_AE_pipeline.py b/benchmark/realworld_data/pipeline_construction/neural/build_AE_pipeline.py deleted file mode 100644 index a9a2797..0000000 --- a/benchmark/realworld_data/pipeline_construction/neural/build_AE_pipeline.py +++ /dev/null @@ -1,78 +0,0 @@ -import sys -import pandas as pd - -dataset = sys.argv[1] -data_name = dataset.split("/")[-1].split(".")[0] -df = pd.read_csv(dataset) -feature_dim = len(df.columns) - 1 # take off label - -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - -for cont_rate in [0.01, 0.05, 0.1, 0.15, 0.2, 0.25]: - # Creating pipeline - pipeline_description = Pipeline() - pipeline_description.add_input(name='inputs') - - # Step 0: dataset_to_dataframe - step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) - step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') - step_0.add_output('produce') - pipeline_description.add_step(step_0) - - # Step 1: column_parser - step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) - step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') - step_1.add_output('produce') - pipeline_description.add_step(step_1) - - # Step 2: extract_columns_by_semantic_types(attributes) - step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) - step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') - step_2.add_output('produce') - step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) - pipeline_description.add_step(step_2) - - # Step 3: extract_columns_by_semantic_types(targets) - step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) - step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') - step_3.add_output('produce') - step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) - pipeline_description.add_step(step_3) - - attributes = 'steps.2.produce' - targets = 'steps.3.produce' - - # Step 4: processing - step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.timeseries_processing.transformation.axiswise_scaler')) - step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference=attributes) - step_4.add_output('produce') - pipeline_description.add_step(step_4) - - # Step 5: algorithm` - step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.pyod_ae')) - step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') - step_5.add_hyperparameter(name='hidden_neurons', argument_type=ArgumentType.VALUE, data=[feature_dim, 32, 16, 32, feature_dim]) - step_5.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=cont_rate) - step_5.add_output('produce') - pipeline_description.add_step(step_5) - - # Step 6: Predictions - step_6 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) - step_6.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.5.produce') - step_6.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') - step_6.add_output('produce') - pipeline_description.add_step(step_6) - - # Final Output - pipeline_description.add_output(name='output predictions', data_reference='steps.6.produce') - - # Output to json - data = pipeline_description.to_json() - with open('./pipelines/AE/'+data_name+'/ae_pipeline_'+str(cont_rate)+'.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/realworld_data/pipeline_construction/neural/build_RNNLSTM_pipeline.py b/benchmark/realworld_data/pipeline_construction/neural/build_RNNLSTM_pipeline.py deleted file mode 100644 index 099ac7c..0000000 --- a/benchmark/realworld_data/pipeline_construction/neural/build_RNNLSTM_pipeline.py +++ /dev/null @@ -1,78 +0,0 @@ -import sys -import pandas as pd - -dataset = sys.argv[1] -data_name = dataset.split("/")[-1].split(".")[0] -df = pd.read_csv(dataset) -feature_dim = len(df.columns) - 1 # take off label - -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - -for cont_rate in [0.01, 0.05, 0.1, 0.15, 0.2, 0.25]: - # Creating pipeline - pipeline_description = Pipeline() - pipeline_description.add_input(name='inputs') - - # Step 0: dataset_to_dataframe - step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) - step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') - step_0.add_output('produce') - pipeline_description.add_step(step_0) - - # Step 1: column_parser - step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) - step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') - step_1.add_output('produce') - pipeline_description.add_step(step_1) - - # Step 2: extract_columns_by_semantic_types(attributes) - step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) - step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') - step_2.add_output('produce') - step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) - pipeline_description.add_step(step_2) - - # Step 3: extract_columns_by_semantic_types(targets) - step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) - step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') - step_3.add_output('produce') - step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) - pipeline_description.add_step(step_3) - - attributes = 'steps.2.produce' - targets = 'steps.3.produce' - - # Step 4: processing - step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.timeseries_processing.transformation.axiswise_scaler')) - step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference=attributes) - step_4.add_output('produce') - pipeline_description.add_step(step_4) - - # Step 5: algorithm` - step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.LSTMODetector')) - step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') - step_5.add_hyperparameter(name='feature_dim', argument_type=ArgumentType.VALUE, data=feature_dim) - step_5.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=cont_rate) - step_5.add_output('produce') - pipeline_description.add_step(step_5) - - # Step 6: Predictions - step_6 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) - step_6.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.5.produce') - step_6.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') - step_6.add_output('produce') - pipeline_description.add_step(step_6) - - # Final Output - pipeline_description.add_output(name='output predictions', data_reference='steps.6.produce') - - # Output to json - data = pipeline_description.to_json() - with open('./pipelines/RNN_LSTM/'+data_name+'/rnnlstm_pipeline_'+str(cont_rate)+'.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/realworld_data/pipeline_construction/pipeline_construction_simple.py b/benchmark/realworld_data/pipeline_construction/pipeline_construction_simple.py deleted file mode 100644 index e6e9959..0000000 --- a/benchmark/realworld_data/pipeline_construction/pipeline_construction_simple.py +++ /dev/null @@ -1,183 +0,0 @@ -import uuid -import random - -from d3m.metadata.pipeline import Pipeline - -from axolotl.algorithms.base import PipelineSearchBase -from axolotl.utils import schemas as schemas_utils - -primitive_python_paths = { # pragma: no cover - 'data_processing': [ - #'d3m.primitives.tods.data_processing.time_interval_transform', - #'d3m.primitives.tods.data_processing.categorical_to_binary', - #'d3m.primitives.tods.data_processing.column_filter', - #'d3m.primitives.tods.data_processing.timestamp_validation', - #'d3m.primitives.tods.data_processing.duplication_validation', - #'d3m.primitives.tods.data_processing.continuity_validation', - ], - 'timeseries_processing': [ - #'d3m.primitives.tods.timeseries_processing.transformation.axiswise_scaler', - #'d3m.primitives.tods.timeseries_processing.subsequence_segmentation', - 'd3m.primitives.tods.timeseries_processing.transformation.standard_scaler', - #'d3m.primitives.tods.timeseries_processing.transformation.power_transformer', - #'d3m.primitives.tods.timeseries_processing.transformation.quantile_transformer', - #'d3m.primitives.tods.timeseries_processing.transformation.moving_average_transform', - #'d3m.primitives.tods.timeseries_processing.transformation.simple_exponential_smoothing', - #'d3m.primitives.tods.timeseries_processing.transformation.holt_smoothing', - #'d3m.primitives.tods.timeseries_processing.transformation.holt_winters_exponential_smoothing', - #'d3m.primitives.tods.timeseries_processing.decomposition.time_series_seasonality_trend_decomposition', - ], - 'feature_analysis': [ - #'d3m.primitives.tods.feature_analysis.auto_correlation', - #'d3m.primitives.tods.feature_analysis.statistical_mean', - #'d3m.primitives.tods.feature_analysis.statistical_median', - #'d3m.primitives.tods.feature_analysis.statistical_g_mean', - #'d3m.primitives.tods.feature_analysis.statistical_abs_energy', - #'d3m.primitives.tods.feature_analysis.statistical_abs_sum', - #'d3m.primitives.tods.feature_analysis.statistical_h_mean', - #'d3m.primitives.tods.feature_analysis.statistical_maximum', - #'d3m.primitives.tods.feature_analysis.statistical_minimum', - #'d3m.primitives.tods.feature_analysis.statistical_mean_abs', - #'d3m.primitives.tods.feature_analysis.statistical_mean_abs_temporal_derivative', - #'d3m.primitives.tods.feature_analysis.statistical_mean_temporal_derivative', - #'d3m.primitives.tods.feature_analysis.statistical_median_abs_deviation', - #'d3m.primitives.tods.feature_analysis.statistical_kurtosis', - #'d3m.primitives.tods.feature_analysis.statistical_skew', - #'d3m.primitives.tods.feature_analysis.statistical_std', - #'d3m.primitives.tods.feature_analysis.statistical_var', - #'d3m.primitives.tods.feature_analysis.statistical_variation', - #'d3m.primitives.tods.feature_analysis.statistical_vec_sum', - #'d3m.primitives.tods.feature_analysis.statistical_willison_amplitude', - #'d3m.primitives.tods.feature_analysis.statistical_zero_crossing', - #'d3m.primitives.tods.feature_analysis.spectral_residual_transform', - #'d3m.primitives.tods.feature_analysis.fast_fourier_transform', - #'d3m.primitives.tods.feature_analysis.discrete_cosine_transform', - #'d3m.primitives.tods.feature_analysis.non_negative_matrix_factorization', - #'d3m.primitives.tods.feature_analysis.bk_filter', - #'d3m.primitives.tods.feature_analysis.hp_filter', - #'d3m.primitives.tods.feature_analysis.truncated_svd', - #'d3m.primitives.tods.feature_analysis.wavelet_transform', - #'d3m.primitives.tods.feature_analysis.trmf', - ], - 'detection_algorithm': [ - #'d3m.primitives.tods.detection_algorithm.pyod_ae', - #'d3m.primitives.tods.detection_algorithm.pyod_vae', - #'d3m.primitives.tods.detection_algorithm.pyod_cof', - #'d3m.primitives.tods.detection_algorithm.pyod_sod', - #'d3m.primitives.tods.detection_algorithm.pyod_abod', - #'d3m.primitives.tods.detection_algorithm.pyod_hbos', - 'd3m.primitives.tods.detection_algorithm.pyod_iforest', - #'d3m.primitives.tods.detection_algorithm.pyod_lof', - #'d3m.primitives.tods.detection_algorithm.pyod_knn', - 'd3m.primitives.tods.detection_algorithm.pyod_ocsvm', - #'d3m.primitives.tods.detection_algorithm.pyod_loda', - #'d3m.primitives.tods.detection_algorithm.pyod_cblof', - 'd3m.primitives.tods.detection_algorithm.pyod_sogaal', - 'd3m.primitives.tods.detection_algorithm.pyod_mogaal', - 'd3m.primitives.tods.detection_algorithm.matrix_profile', - 'd3m.primitives.tods.detection_algorithm.AutoRegODetector', - #'d3m.primitives.tods.detection_algorithm.LSTMODetector', - #'d3m.primitives.tods.detection_algorithm.AutoRegODetector', - #'d3m.primitives.tods.detection_algorithm.PCAODetector', - #'d3m.primitives.tods.detection_algorithm.KDiscordODetector', - #'d3m.primitives.tods.detection_algorithm.deeplog', - #'d3m.primitives.tods.detection_algorithm.telemanom', - ], - 'contamination': [0.01, 0.05, 0.1, 0.15, 0.2, 0.25], -} - -def _generate_pipeline(combinations): - from d3m import index - from d3m.metadata.base import ArgumentType - from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - piplines = [] - for combination in combinations: - # Creating pipeline - pipeline_description = Pipeline() - pipeline_description.add_input(name='inputs') - - # The first three steps are fixed - # Step 0: dataset_to_dataframe - step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) - step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') - step_0.add_output('produce') - pipeline_description.add_step(step_0) - - # Step 1: column_parser - step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) - step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') - step_1.add_output('produce') - pipeline_description.add_step(step_1) - - # Step 2: extract_columns_by_semantic_types(attributes) - step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) - step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') - step_2.add_output('produce') - step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) - pipeline_description.add_step(step_2) - - # Step 3: extract_columns_by_semantic_types(targets) - step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) - step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') - step_3.add_output('produce') - step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) - pipeline_description.add_step(step_3) - - attributes = 'steps.2.produce' - targets = 'steps.3.produce' - - tods_step_4 = PrimitiveStep(primitive=index.get_primitive(combination[0])) - tods_step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference=attributes) - #tods_step_4.add_hyperparameter(name='window_size', argument_type=ArgumentType.VALUE, data=10) - #tods_step_4.add_hyperparameter(name='step', argument_type=ArgumentType.VALUE, data=1) - tods_step_4.add_output('produce') - pipeline_description.add_step(tods_step_4) - - tods_step_5= PrimitiveStep(primitive=index.get_primitive(combination[1])) - tods_step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') - tods_step_5.add_output('produce') - tods_step_5.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=combination[2]) - pipeline_description.add_step(tods_step_5) - - # Finalize the pipeline - final_step = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) - final_step.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.5.produce') - final_step.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') - final_step.add_output('produce') - pipeline_description.add_step(final_step) - - pipeline_description.add_output(name='output predictions', data_reference='steps.6.produce') - data = pipeline_description.to_json() - #with open('../pipelines/'+str(combination[1].split(".")[-1])+'_'+str(combination[2])+".json", 'w') as f: - with open('./pipelines/simple/'+str(combination[1].split(".")[-1])+'_'+str(combination[2])+".json", 'w') as f: - f.write(data) - pipeline_description.id = str(uuid.uuid4()) - pipeline_description.created = Pipeline().created - piplines.append(pipeline_description) - return piplines - -def _generate_pipelines(primitive_python_paths, cpu_count=40): # pragma: no cover - """ - Args: - primitive_python_paths: a list of primitive Python paths for algorithms - - Returns: - the pipline description json - """ - import itertools - import multiprocessing as mp - - #components = ['data_processing', 'timeseries_processing', 'feature_analysis', 'detection_algorithm'] - components = ['timeseries_processing', 'detection_algorithm', 'contamination'] - combinations = itertools.product(*(primitive_python_paths[k] for k in components)) - - - return _generate_pipeline(combinations) - - -if __name__ == "__main__": - combinations = _generate_pipelines(primitive_python_paths) - print(combinations) diff --git a/benchmark/realworld_data/pipeline_construction/pipeline_construction_subseq.py b/benchmark/realworld_data/pipeline_construction/pipeline_construction_subseq.py deleted file mode 100644 index a3df2d7..0000000 --- a/benchmark/realworld_data/pipeline_construction/pipeline_construction_subseq.py +++ /dev/null @@ -1,183 +0,0 @@ -import uuid -import random - -from d3m.metadata.pipeline import Pipeline - -from axolotl.algorithms.base import PipelineSearchBase -from axolotl.utils import schemas as schemas_utils - -primitive_python_paths = { # pragma: no cover - 'data_processing': [ - #'d3m.primitives.tods.data_processing.time_interval_transform', - #'d3m.primitives.tods.data_processing.categorical_to_binary', - #'d3m.primitives.tods.data_processing.column_filter', - #'d3m.primitives.tods.data_processing.timestamp_validation', - #'d3m.primitives.tods.data_processing.duplication_validation', - #'d3m.primitives.tods.data_processing.continuity_validation', - ], - 'timeseries_processing': [ - #'d3m.primitives.tods.timeseries_processing.transformation.axiswise_scaler', - 'd3m.primitives.tods.timeseries_processing.subsequence_segmentation', - #'d3m.primitives.tods.timeseries_processing.transformation.standard_scaler', - #'d3m.primitives.tods.timeseries_processing.transformation.power_transformer', - #'d3m.primitives.tods.timeseries_processing.transformation.quantile_transformer', - #'d3m.primitives.tods.timeseries_processing.transformation.moving_average_transform', - #'d3m.primitives.tods.timeseries_processing.transformation.simple_exponential_smoothing', - #'d3m.primitives.tods.timeseries_processing.transformation.holt_smoothing', - #'d3m.primitives.tods.timeseries_processing.transformation.holt_winters_exponential_smoothing', - #'d3m.primitives.tods.timeseries_processing.decomposition.time_series_seasonality_trend_decomposition', - ], - 'feature_analysis': [ - #'d3m.primitives.tods.feature_analysis.auto_correlation', - #'d3m.primitives.tods.feature_analysis.statistical_mean', - #'d3m.primitives.tods.feature_analysis.statistical_median', - #'d3m.primitives.tods.feature_analysis.statistical_g_mean', - #'d3m.primitives.tods.feature_analysis.statistical_abs_energy', - #'d3m.primitives.tods.feature_analysis.statistical_abs_sum', - #'d3m.primitives.tods.feature_analysis.statistical_h_mean', - #'d3m.primitives.tods.feature_analysis.statistical_maximum', - #'d3m.primitives.tods.feature_analysis.statistical_minimum', - #'d3m.primitives.tods.feature_analysis.statistical_mean_abs', - #'d3m.primitives.tods.feature_analysis.statistical_mean_abs_temporal_derivative', - #'d3m.primitives.tods.feature_analysis.statistical_mean_temporal_derivative', - #'d3m.primitives.tods.feature_analysis.statistical_median_abs_deviation', - #'d3m.primitives.tods.feature_analysis.statistical_kurtosis', - #'d3m.primitives.tods.feature_analysis.statistical_skew', - #'d3m.primitives.tods.feature_analysis.statistical_std', - #'d3m.primitives.tods.feature_analysis.statistical_var', - #'d3m.primitives.tods.feature_analysis.statistical_variation', - #'d3m.primitives.tods.feature_analysis.statistical_vec_sum', - #'d3m.primitives.tods.feature_analysis.statistical_willison_amplitude', - #'d3m.primitives.tods.feature_analysis.statistical_zero_crossing', - #'d3m.primitives.tods.feature_analysis.spectral_residual_transform', - #'d3m.primitives.tods.feature_analysis.fast_fourier_transform', - #'d3m.primitives.tods.feature_analysis.discrete_cosine_transform', - #'d3m.primitives.tods.feature_analysis.non_negative_matrix_factorization', - #'d3m.primitives.tods.feature_analysis.bk_filter', - #'d3m.primitives.tods.feature_analysis.hp_filter', - #'d3m.primitives.tods.feature_analysis.truncated_svd', - #'d3m.primitives.tods.feature_analysis.wavelet_transform', - #'d3m.primitives.tods.feature_analysis.trmf', - ], - 'detection_algorithm': [ - #'d3m.primitives.tods.detection_algorithm.pyod_ae', - #'d3m.primitives.tods.detection_algorithm.pyod_vae', - #'d3m.primitives.tods.detection_algorithm.pyod_cof', - #'d3m.primitives.tods.detection_algorithm.pyod_sod', - #'d3m.primitives.tods.detection_algorithm.pyod_abod', - #'d3m.primitives.tods.detection_algorithm.pyod_hbos', - 'd3m.primitives.tods.detection_algorithm.pyod_iforest', - #'d3m.primitives.tods.detection_algorithm.pyod_lof', - #'d3m.primitives.tods.detection_algorithm.pyod_knn', - 'd3m.primitives.tods.detection_algorithm.pyod_ocsvm', - #'d3m.primitives.tods.detection_algorithm.pyod_loda', - #'d3m.primitives.tods.detection_algorithm.pyod_cblof', - 'd3m.primitives.tods.detection_algorithm.pyod_sogaal', - #'d3m.primitives.tods.detection_algorithm.pyod_mogaal', - #'d3m.primitives.tods.detection_algorithm.matrix_profile', - #'d3m.primitives.tods.detection_algorithm.AutoRegODetector', - #'d3m.primitives.tods.detection_algorithm.LSTMODetector', - #'d3m.primitives.tods.detection_algorithm.AutoRegODetector', - #'d3m.primitives.tods.detection_algorithm.PCAODetector', - #'d3m.primitives.tods.detection_algorithm.KDiscordODetector', - #'d3m.primitives.tods.detection_algorithm.deeplog', - #'d3m.primitives.tods.detection_algorithm.telemanom', - ], - 'contamination': [0.01, 0.05, 0.1, 0.15, 0.2, 0.25], -} - -def _generate_pipeline(combinations): - from d3m import index - from d3m.metadata.base import ArgumentType - from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - piplines = [] - for combination in combinations: - # Creating pipeline - pipeline_description = Pipeline() - pipeline_description.add_input(name='inputs') - - # The first three steps are fixed - # Step 0: dataset_to_dataframe - step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) - step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') - step_0.add_output('produce') - pipeline_description.add_step(step_0) - - # Step 1: column_parser - step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) - step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') - step_1.add_output('produce') - pipeline_description.add_step(step_1) - - # Step 2: extract_columns_by_semantic_types(attributes) - step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) - step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') - step_2.add_output('produce') - step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) - pipeline_description.add_step(step_2) - - # Step 3: extract_columns_by_semantic_types(targets) - step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) - step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') - step_3.add_output('produce') - step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) - pipeline_description.add_step(step_3) - - attributes = 'steps.2.produce' - targets = 'steps.3.produce' - - tods_step_4 = PrimitiveStep(primitive=index.get_primitive(combination[0])) - tods_step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference=attributes) - tods_step_4.add_hyperparameter(name='window_size', argument_type=ArgumentType.VALUE, data=10) - tods_step_4.add_hyperparameter(name='step', argument_type=ArgumentType.VALUE, data=1) - tods_step_4.add_output('produce') - pipeline_description.add_step(tods_step_4) - - tods_step_5= PrimitiveStep(primitive=index.get_primitive(combination[1])) - tods_step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') - tods_step_5.add_output('produce') - tods_step_5.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=combination[2]) - pipeline_description.add_step(tods_step_5) - - # Finalize the pipeline - final_step = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) - final_step.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.5.produce') - final_step.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') - final_step.add_output('produce') - pipeline_description.add_step(final_step) - - pipeline_description.add_output(name='output predictions', data_reference='steps.6.produce') - data = pipeline_description.to_json() - #with open('../pipelines/'+str(combination[1].split(".")[-1])+'_'+str(combination[2])+".json", 'w') as f: - with open('./pipelines/subseq/'+str(combination[1].split(".")[-1])+'_subseq_'+str(combination[2])+".json", 'w') as f: - f.write(data) - pipeline_description.id = str(uuid.uuid4()) - pipeline_description.created = Pipeline().created - piplines.append(pipeline_description) - return piplines - -def _generate_pipelines(primitive_python_paths, cpu_count=40): # pragma: no cover - """ - Args: - primitive_python_paths: a list of primitive Python paths for algorithms - - Returns: - the pipline description json - """ - import itertools - import multiprocessing as mp - - #components = ['data_processing', 'timeseries_processing', 'feature_analysis', 'detection_algorithm'] - components = ['timeseries_processing', 'detection_algorithm', 'contamination'] - combinations = itertools.product(*(primitive_python_paths[k] for k in components)) - - - return _generate_pipeline(combinations) - - -if __name__ == "__main__": - combinations = _generate_pipelines(primitive_python_paths) - print(combinations) diff --git a/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.01.json b/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.01.json deleted file mode 100644 index 415a4f5..0000000 --- a/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.01.json +++ /dev/null @@ -1 +0,0 @@ -{"id": "9913179f-f470-49fa-b373-a53603341cf7", "schema": "https://metadata.datadrivendiscovery.org/schemas/v0/pipeline.json", "created": "2021-06-01T20:36:06.644888Z", "inputs": [{"name": "inputs"}], "outputs": [{"data": "steps.6.produce", "name": "output predictions"}], "steps": [{"type": "PRIMITIVE", "primitive": {"id": "c78138d9-9377-31dc-aee8-83d9df049c60", "version": "0.3.0", "python_path": "d3m.primitives.tods.data_processing.dataset_to_dataframe", "name": "Extract a DataFrame from a Dataset"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "inputs.0"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "81235c29-aeb9-3828-911a-1b25319b6998", "version": "0.6.0", "python_path": "d3m.primitives.tods.data_processing.column_parser", "name": "Parses strings into their types"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.0.produce"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "a996cd89-ddf0-367f-8e7f-8c013cbc2891", "version": "0.4.0", "python_path": "d3m.primitives.tods.data_processing.extract_columns_by_semantic_types", "name": "Extracts columns by semantic type"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.1.produce"}}, "outputs": [{"id": "produce"}], "hyperparams": {"semantic_types": {"type": "VALUE", "data": ["https://metadata.datadrivendiscovery.org/types/Attribute"]}}}, {"type": "PRIMITIVE", "primitive": {"id": "a996cd89-ddf0-367f-8e7f-8c013cbc2891", "version": "0.4.0", "python_path": "d3m.primitives.tods.data_processing.extract_columns_by_semantic_types", "name": "Extracts columns by semantic type"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.0.produce"}}, "outputs": [{"id": "produce"}], "hyperparams": {"semantic_types": {"type": "VALUE", "data": ["https://metadata.datadrivendiscovery.org/types/TrueTarget"]}}}, {"type": "PRIMITIVE", "primitive": {"id": "642de2e7-5590-3cab-9266-2a53c326c461", "version": "0.0.1", "python_path": "d3m.primitives.tods.timeseries_processing.transformation.axiswise_scaler", "name": "Axis_wise_scale"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.2.produce"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "67e7fcdf-d645-3417-9aa4-85cd369487d9", "version": "0.0.1", "python_path": "d3m.primitives.tods.detection_algorithm.pyod_ae", "name": "TODS.anomaly_detection_primitives.AutoEncoder"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.4.produce"}}, "outputs": [{"id": "produce"}], "hyperparams": {"hidden_neurons": {"type": "VALUE", "data": [29, 32, 16, 32, 29]}, "contamination": {"type": "VALUE", "data": 0.01}}}, {"type": "PRIMITIVE", "primitive": {"id": "2530840a-07d4-3874-b7d8-9eb5e4ae2bf3", "version": "0.3.0", "python_path": "d3m.primitives.tods.data_processing.construct_predictions", "name": "Construct pipeline predictions output"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.5.produce"}, "reference": {"type": "CONTAINER", "data": "steps.1.produce"}}, "outputs": [{"id": "produce"}]}], "digest": "d42e26f9c3f72aaaf3935c651f6a54ef95dad4e3185d48eaed8001593aed3f43"} \ No newline at end of file diff --git a/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.05.json b/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.05.json deleted file mode 100644 index ae2a360..0000000 --- a/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.05.json +++ /dev/null @@ -1 +0,0 @@ -{"id": "29622c5d-efe7-4686-8879-62cf363fb250", "schema": "https://metadata.datadrivendiscovery.org/schemas/v0/pipeline.json", "created": "2021-06-01T20:36:17.614201Z", "inputs": [{"name": "inputs"}], "outputs": [{"data": "steps.6.produce", "name": "output predictions"}], "steps": [{"type": "PRIMITIVE", "primitive": {"id": "c78138d9-9377-31dc-aee8-83d9df049c60", "version": 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b/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.1.json deleted file mode 100644 index f3d4056..0000000 --- a/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.1.json +++ /dev/null @@ -1 +0,0 @@ -{"id": "ccc31853-42c3-4d22-8d55-094d4dde69a0", "schema": "https://metadata.datadrivendiscovery.org/schemas/v0/pipeline.json", "created": "2021-06-01T20:36:17.660637Z", "inputs": [{"name": "inputs"}], "outputs": [{"data": "steps.6.produce", "name": "output predictions"}], "steps": [{"type": "PRIMITIVE", "primitive": {"id": "c78138d9-9377-31dc-aee8-83d9df049c60", "version": "0.3.0", "python_path": "d3m.primitives.tods.data_processing.dataset_to_dataframe", "name": "Extract a DataFrame from a Dataset"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "inputs.0"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "81235c29-aeb9-3828-911a-1b25319b6998", "version": "0.6.0", "python_path": 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a/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.2.json b/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.2.json deleted file mode 100644 index 441508e..0000000 --- a/benchmark/realworld_data/pipelines/AE/creditcard/ae_pipeline_0.2.json +++ /dev/null @@ -1 +0,0 @@ -{"id": "47a631e4-dbcc-4b44-8a8c-983280d130c9", "schema": "https://metadata.datadrivendiscovery.org/schemas/v0/pipeline.json", "created": "2021-06-01T20:36:17.772373Z", "inputs": [{"name": "inputs"}], "outputs": [{"data": "steps.6.produce", "name": "output predictions"}], "steps": [{"type": "PRIMITIVE", "primitive": {"id": "c78138d9-9377-31dc-aee8-83d9df049c60", "version": "0.3.0", "python_path": "d3m.primitives.tods.data_processing.dataset_to_dataframe", "name": "Extract a DataFrame from a Dataset"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "inputs.0"}}, "outputs": [{"id": "produce"}]}, {"type": "PRIMITIVE", "primitive": {"id": "81235c29-aeb9-3828-911a-1b25319b6998", "version": 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b/benchmark/realworld_data/result/creditcard/ae_pipeline_0.01.csv deleted file mode 100644 index 8ef91f9..0000000 --- a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.10319410319410319,0.10319410319410319,0,0 -RECALL,0.5975609756097561,0.5975609756097561,0,0 -F1_MACRO,0.5855667991648094,0.5855667991648094,0,0 -F1,0.17599521101466625,0.17599521101466625,0,0 diff --git a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.05.csv b/benchmark/realworld_data/result/creditcard/ae_pipeline_0.05.csv deleted file mode 100644 index b055362..0000000 --- a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.030334948388455865,0.030334948388455865,0,0 -RECALL,0.8780487804878049,0.8780487804878049,0,0 -F1_MACRO,0.5168246561700934,0.5168246561700934,0,0 -F1,0.05864386072083078,0.05864386072083078,0,0 diff --git a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.1.csv b/benchmark/realworld_data/result/creditcard/ae_pipeline_0.1.csv deleted file mode 100644 index 3f2bd3c..0000000 --- a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.015589340261929005,0.015589340261929005,0,0 -RECALL,0.9024390243902439,0.9024390243902439,0,0 -F1_MACRO,0.4893508148006395,0.4893508148006395,0,0 -F1,0.03064922514064819,0.03064922514064819,0,0 diff --git a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.15.csv b/benchmark/realworld_data/result/creditcard/ae_pipeline_0.15.csv deleted file mode 100644 index 6a36ac6..0000000 --- a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.010486645911846632,0.010486645911846632,0,0 -RECALL,0.9105691056910569,0.9105691056910569,0,0 -F1_MACRO,0.47017260810850425,0.47017260810850425,0,0 -F1,0.02073450119177099,0.02073450119177099,0,0 diff --git a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.2.csv b/benchmark/realworld_data/result/creditcard/ae_pipeline_0.2.csv deleted file mode 100644 index 46d0734..0000000 --- a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.008022892454618869,0.008022892454618869,0,0 -RECALL,0.9288617886178862,0.9288617886178862,0,0 -F1_MACRO,0.45275659493678916,0.45275659493678916,0,0 -F1,0.015908378877014656,0.015908378877014656,0,0 diff --git a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.25.csv b/benchmark/realworld_data/result/creditcard/ae_pipeline_0.25.csv deleted file mode 100644 index 263512e..0000000 --- a/benchmark/realworld_data/result/creditcard/ae_pipeline_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.00651667088003146,0.00651667088003146,0,0 -RECALL,0.943089430894309,0.943089430894309,0,0 -F1_MACRO,0.43541033390902695,0.43541033390902695,0,0 -F1,0.01294390046586883,0.01294390046586883,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_ae_subseq_0.2.csv b/benchmark/realworld_data/result/creditcard/pyod_ae_subseq_0.2.csv deleted file mode 100644 index 46eae20..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_ae_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.006776447456198869,0.006776447456198869,0,0 -RECALL,0.7845528455284553,0.7845528455284553,0,0 -F1_MACRO,0.4513821951575359,0.4513821951575359,0,0 -F1,0.013436836425662268,0.013436836425662268,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.01.csv b/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.01.csv deleted file mode 100644 index d6c362c..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.03896103896103896,0.03896103896103896,0,0 -RECALL,0.22560975609756098,0.22560975609756098,0,0 -F1_MACRO,0.5304696137286743,0.5304696137286743,0,0 -F1,0.06644717150553728,0.06644717150553728,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.05.csv b/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.05.csv deleted file mode 100644 index 5112a57..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.017063408468506427,0.017063408468506427,0,0 -RECALL,0.49390243902439024,0.49390243902439024,0,0 -F1_MACRO,0.5036556980644115,0.5036556980644115,0,0 -F1,0.03298717165546733,0.03298717165546733,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.1.csv b/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.1.csv deleted file mode 100644 index f0c2de2..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.007829781257680558,0.007829781257680558,0,0 -RECALL,0.4532520325203252,0.4532520325203252,0,0 -F1_MACRO,0.4813142493793073,0.4813142493793073,0,0 -F1,0.015393642356676904,0.015393642356676904,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.15.csv b/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.15.csv deleted file mode 100644 index 11a0312..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.00784157674211746,0.00784157674211746,0,0 -RECALL,0.6808943089430894,0.6808943089430894,0,0 -F1_MACRO,0.4673429890294702,0.4673429890294702,0,0 -F1,0.015504593525096616,0.015504593525096616,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.2.csv b/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.2.csv deleted file mode 100644 index 41bdcec..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.006758891892840842,0.006758891892840842,0,0 -RECALL,0.782520325203252,0.782520325203252,0,0 -F1_MACRO,0.45136283741416616,0.45136283741416616,0,0 -F1,0.013402025968600968,0.013402025968600968,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.25.csv b/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.25.csv deleted file mode 100644 index f1d178f..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_iforest_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.00550546332968175,0.00550546332968175,0,0 -RECALL,0.7967479674796748,0.7967479674796748,0,0 -F1_MACRO,0.4342614642270172,0.4342614642270172,0,0 -F1,0.010935364186682289,0.010935364186682289,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_mogaal_0.01.csv b/benchmark/realworld_data/result/creditcard/pyod_mogaal_0.01.csv deleted file mode 100644 index e881c18..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_mogaal_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.4995677552440425,0.4995677552440425,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_mogaal_0.15.csv b/benchmark/realworld_data/result/creditcard/pyod_mogaal_0.15.csv deleted file mode 100644 index e881c18..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_mogaal_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.4995677552440425,0.4995677552440425,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_mogaal_0.25.csv b/benchmark/realworld_data/result/creditcard/pyod_mogaal_0.25.csv deleted file mode 100644 index e881c18..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_mogaal_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.4995677552440425,0.4995677552440425,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.01.csv b/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.01.csv deleted file mode 100644 index df5cdee..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.002106002106002106,0.002106002106002106,0,0 -RECALL,0.012195121951219513,0.012195121951219513,0,0 -F1_MACRO,0.49885647454400656,0.49885647454400656,0,0 -F1,0.003591739000299312,0.003591739000299312,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.05.csv b/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.05.csv deleted file mode 100644 index 7f1cd5e..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0016852749104697704,0.0016852749104697704,0,0 -RECALL,0.04878048780487805,0.04878048780487805,0,0 -F1_MACRO,0.4883964291483037,0.4883964291483037,0,0 -F1,0.003257992262268377,0.003257992262268377,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.1.csv b/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.1.csv deleted file mode 100644 index 5653b65..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0018608897159509848,0.0018608897159509848,0,0 -RECALL,0.10772357723577236,0.10772357723577236,0,0 -F1_MACRO,0.47513227597828245,0.47513227597828245,0,0 -F1,0.0036585786766989955,0.0036585786766989955,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.15.csv b/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.15.csv deleted file mode 100644 index 92f3958..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.001544907656655977,0.001544907656655977,0,0 -RECALL,0.13414634146341464,0.13414634146341464,0,0 -F1_MACRO,0.4606069931687612,0.4606069931687612,0,0 -F1,0.0030546363362876916,0.0030546363362876916,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.2.csv b/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.2.csv deleted file mode 100644 index 74ddb54..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0014044450686422527,0.0014044450686422527,0,0 -RECALL,0.16260162601626016,0.16260162601626016,0,0 -F1_MACRO,0.44545872568638833,0.44545872568638833,0,0 -F1,0.0027848365649040968,0.0027848365649040968,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.25.csv b/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.25.csv deleted file mode 100644 index f792dc9..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_ocsvm_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0014606331282829134,0.0014606331282829134,0,0 -RECALL,0.21138211382113822,0.21138211382113822,0,0 -F1_MACRO,0.42966598549897833,0.42966598549897833,0,0 -F1,0.0029012190699361177,0.0029012190699361177,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.01.csv b/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.01.csv deleted file mode 100644 index e881c18..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.4995677552440425,0.4995677552440425,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.05.csv b/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.05.csv deleted file mode 100644 index e881c18..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.4995677552440425,0.4995677552440425,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.1.csv b/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.1.csv deleted file mode 100644 index e881c18..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.4995677552440425,0.4995677552440425,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.15.csv b/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.15.csv deleted file mode 100644 index e881c18..0000000 --- a/benchmark/realworld_data/result/creditcard/pyod_sogaal_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.4995677552440425,0.4995677552440425,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/creditcard/rnnlstm_pipeline_0.01.csv b/benchmark/realworld_data/result/creditcard/rnnlstm_pipeline_0.01.csv deleted file mode 100644 index 61c1dce..0000000 --- a/benchmark/realworld_data/result/creditcard/rnnlstm_pipeline_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.009126009126009126,0.009126009126009126,0,0 -RECALL,0.052845528455284556,0.052845528455284556,0,0 -F1_MACRO,0.5048780248648956,0.5048780248648956,0,0 -F1,0.01556420233463035,0.01556420233463035,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.01.csv b/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.01.csv deleted file mode 100644 index 2f790a3..0000000 --- a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.8308333333333333,0.8308333333333333,0,0 -RECALL,0.034908963585434175,0.034908963585434175,0,0 -F1_MACRO,0.467467287769431,0.467467287769431,0,0 -F1,0.06700268817204302,0.06700268817204302,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.05.csv b/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.05.csv deleted file mode 100644 index 132201f..0000000 --- a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.6946666666666667,0.6946666666666667,0,0 -RECALL,0.14593837535014006,0.14593837535014006,0,0 -F1_MACRO,0.5567778643129111,0.5567778643129111,0,0 -F1,0.2412037037037037,0.2412037037037037,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.1.csv b/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.1.csv deleted file mode 100644 index 98ea00e..0000000 --- a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.5664638719893325,0.5664638719893325,0,0 -RECALL,0.23799019607843136,0.23799019607843136,0,0 -F1_MACRO,0.599981581153264,0.599981581153264,0,0 -F1,0.3351660543899011,0.3351660543899011,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.15.csv b/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.15.csv deleted file mode 100644 index f0d6ef2..0000000 --- a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.48430468359353296,0.48430468359353296,0,0 -RECALL,0.3052170868347339,0.3052170868347339,0,0 -F1_MACRO,0.611943459592691,0.611943459592691,0,0 -F1,0.37444962305891455,0.37444962305891455,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.2.csv b/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.2.csv deleted file mode 100644 index e833a29..0000000 --- a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.42132677723143597,0.42132677723143597,0,0 -RECALL,0.3540266106442577,0.3540266106442577,0,0 -F1_MACRO,0.6061219291721907,0.6061219291721907,0,0 -F1,0.3847558887324479,0.3847558887324479,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.25.csv b/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.25.csv deleted file mode 100644 index 35fab19..0000000 --- a/benchmark/realworld_data/result/swan_sf/AutoRegODetector_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.37519167944529636,0.37519167944529636,0,0 -RECALL,0.3940826330532213,0.3940826330532213,0,0 -F1_MACRO,0.5928650731996797,0.5928650731996797,0,0 -F1,0.38440520509580245,0.38440520509580245,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.01.csv b/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.01.csv deleted file mode 100644 index 46aca43..0000000 --- a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.8808333333333334,0.8808333333333334,0,0 -RECALL,0.03700980392156863,0.03700980392156863,0,0 -F1_MACRO,0.46976880492954287,0.46976880492954287,0,0 -F1,0.07103494623655915,0.07103494623655915,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.05.csv b/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.05.csv deleted file mode 100644 index 20c2430..0000000 --- a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.7805,0.7805,0,0 -RECALL,0.16397058823529412,0.16397058823529412,0,0 -F1_MACRO,0.574186299325026,0.574186299325026,0,0 -F1,0.27100694444444445,0.27100694444444445,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.1.csv b/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.1.csv deleted file mode 100644 index 977d946..0000000 --- a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.5850833333333333,0.5850833333333333,0,0 -RECALL,0.24583333333333332,0.24583333333333332,0,0 -F1_MACRO,0.606620430697076,0.606620430697076,0,0 -F1,0.3462031558185404,0.3462031558185404,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.15.csv b/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.15.csv deleted file mode 100644 index c6e7c3b..0000000 --- a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.5535,0.5535,0,0 -RECALL,0.34884453781512603,0.34884453781512603,0,0 -F1_MACRO,0.6451389066537054,0.6451389066537054,0,0 -F1,0.4279639175257732,0.4279639175257732,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.2.csv b/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.2.csv deleted file mode 100644 index dc58398..0000000 --- a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.5348333333333334,0.5348333333333334,0,0 -RECALL,0.44943977591036416,0.44943977591036416,0,0 -F1_MACRO,0.6724918488375945,0.6724918488375945,0,0 -F1,0.48843226788432265,0.48843226788432265,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.25.csv b/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.25.csv deleted file mode 100644 index bb2d4e9..0000000 --- a/benchmark/realworld_data/result/swan_sf/ae_pipeline_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.4972664844322955,0.4972664844322955,0,0 -RECALL,0.5223039215686275,0.5223039215686275,0,0 -F1_MACRO,0.6755841201339214,0.6755841201339214,0,0 -F1,0.5094777827111582,0.5094777827111582,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.01.csv b/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.01.csv deleted file mode 100644 index ddd8e64..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.7183333333333334,0.7183333333333334,0,0 -RECALL,0.030182072829131653,0.030182072829131653,0,0 -F1_MACRO,0.4622888741591791,0.4622888741591791,0,0 -F1,0.05793010752688172,0.05793010752688172,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.05.csv b/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.05.csv deleted file mode 100644 index 667695c..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.645,0.645,0,0 -RECALL,0.13550420168067226,0.13550420168067226,0,0 -F1_MACRO,0.5467046339563862,0.5467046339563862,0,0 -F1,0.22395833333333331,0.22395833333333331,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.1.csv b/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.1.csv deleted file mode 100644 index 970da74..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.46975,0.46975,0,0 -RECALL,0.19737394957983193,0.19737394957983193,0,0 -F1_MACRO,0.5655587123234999,0.5655587123234999,0,0 -F1,0.2779585798816568,0.2779585798816568,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.15.csv b/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.15.csv deleted file mode 100644 index c7055c0..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.4241666666666667,0.4241666666666667,0,0 -RECALL,0.26733193277310924,0.26733193277310924,0,0 -F1_MACRO,0.5831041671996111,0.5831041671996111,0,0 -F1,0.3279639175257732,0.3279639175257732,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.2.csv b/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.2.csv deleted file mode 100644 index 8f25787..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.39345833333333335,0.39345833333333335,0,0 -RECALL,0.3306372549019608,0.3306372549019608,0,0 -F1_MACRO,0.589835261743423,0.589835261743423,0,0 -F1,0.3593226788432268,0.3593226788432268,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.25.csv b/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.25.csv deleted file mode 100644 index 074bf55..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_ae_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.37866666666666665,0.37866666666666665,0,0 -RECALL,0.39775910364145656,0.39775910364145656,0,0 -F1_MACRO,0.595223638939486,0.595223638939486,0,0 -F1,0.3879781420765027,0.3879781420765027,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.01.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.01.csv deleted file mode 100644 index 6d89227..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.975,0.975,0,0 -RECALL,0.04096638655462185,0.04096638655462185,0,0 -F1_MACRO,0.47410332891442036,0.47410332891442036,0,0 -F1,0.07862903225806452,0.07862903225806452,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.05.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.05.csv deleted file mode 100644 index 11d8b34..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.8615,0.8615,0,0 -RECALL,0.1809873949579832,0.1809873949579832,0,0 -F1_MACRO,0.5906144535306335,0.5906144535306335,0,0 -F1,0.29913194444444446,0.29913194444444446,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.1.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.1.csv deleted file mode 100644 index 4e5a8d0..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.734,0.734,0,0 -RECALL,0.30840336134453783,0.30840336134453783,0,0 -F1_MACRO,0.6596387043485072,0.6596387043485072,0,0 -F1,0.43431952662721895,0.43431952662721895,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.15.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.15.csv deleted file mode 100644 index 373cae6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.6548888888888889,0.6548888888888889,0,0 -RECALL,0.41274509803921566,0.41274509803921566,0,0 -F1_MACRO,0.6937700920075379,0.6937700920075379,0,0 -F1,0.5063573883161512,0.5063573883161512,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.2.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.2.csv deleted file mode 100644 index 8d976d1..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.5874166666666667,0.5874166666666667,0,0 -RECALL,0.4936274509803922,0.4936274509803922,0,0 -F1_MACRO,0.703235324497142,0.703235324497142,0,0 -F1,0.5364535768645359,0.5364535768645359,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.25.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.25.csv deleted file mode 100644 index c8bad7b..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.5689666666666666,0.5689666666666666,0,0 -RECALL,0.5976540616246498,0.5976540616246498,0,0 -F1_MACRO,0.7241783401277935,0.7241783401277935,0,0 -F1,0.5829576502732239,0.5829576502732239,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.01.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.01.csv deleted file mode 100644 index fec21b1..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.9975,0.9975,0,0 -RECALL,0.04191176470588235,0.04191176470588235,0,0 -F1_MACRO,0.47513901163647076,0.47513901163647076,0,0 -F1,0.08044354838709676,0.08044354838709676,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.05.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.05.csv deleted file mode 100644 index 1fd0941..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.6603333333333333,0.6603333333333333,0,0 -RECALL,0.13872549019607844,0.13872549019607844,0,0 -F1_MACRO,0.5498144903080651,0.5498144903080651,0,0 -F1,0.2292824074074074,0.2292824074074074,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.1.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.1.csv deleted file mode 100644 index c819394..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.5248333333333334,0.5248333333333334,0,0 -RECALL,0.22051820728291316,0.22051820728291316,0,0 -F1_MACRO,0.5851698364889145,0.5851698364889145,0,0 -F1,0.31055226824457594,0.31055226824457594,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.15.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.15.csv deleted file mode 100644 index 85a09b9..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.4908888888888889,0.4908888888888889,0,0 -RECALL,0.30938375350140057,0.30938375350140057,0,0 -F1_MACRO,0.6151074842461607,0.6151074842461607,0,0 -F1,0.379553264604811,0.379553264604811,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.2.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.2.csv deleted file mode 100644 index 8900843..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.425375,0.425375,0,0 -RECALL,0.3574579831932773,0.3574579831932773,0,0 -F1_MACRO,0.6084957231976332,0.6084957231976332,0,0 -F1,0.3884703196347032,0.3884703196347032,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.25.csv b/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.25.csv deleted file mode 100644 index 996acbb..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_iforest_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.40576666666666666,0.40576666666666666,0,0 -RECALL,0.4262254901960784,0.4262254901960784,0,0 -F1_MACRO,0.6135876557666176,0.6135876557666176,0,0 -F1,0.4157445355191257,0.4157445355191257,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.01.csv b/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.01.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.05.csv b/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.05.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.1.csv b/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.1.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.15.csv b/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.15.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.2.csv b/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.2.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.25.csv b/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.25.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_mogaal_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.01.csv b/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.01.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.05.csv b/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.05.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.1.csv b/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.1.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.15.csv b/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.15.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.2.csv b/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.2.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.25.csv b/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.25.csv deleted file mode 100644 index 685dbf6..0000000 --- a/benchmark/realworld_data/result/swan_sf/pyod_sogaal_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.43246311010215666,0.43246311010215666,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/rnnlstm_pipeline_0.05.csv b/benchmark/realworld_data/result/swan_sf/rnnlstm_pipeline_0.05.csv deleted file mode 100644 index 4f0c3d6..0000000 --- a/benchmark/realworld_data/result/swan_sf/rnnlstm_pipeline_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.39016666666666666,0.39016666666666666,0,0 -RECALL,0.08196778711484594,0.08196778711484594,0,0 -F1_MACRO,0.4950201735029422,0.4950201735029422,0,0 -F1,0.13547453703703702,0.13547453703703702,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/rnnlstm_pipeline_0.2.csv b/benchmark/realworld_data/result/swan_sf/rnnlstm_pipeline_0.2.csv deleted file mode 100644 index 1dd5345..0000000 --- a/benchmark/realworld_data/result/swan_sf/rnnlstm_pipeline_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.3045,0.3045,0,0 -RECALL,0.25588235294117645,0.25588235294117645,0,0 -F1_MACRO,0.5378247066458527,0.5378247066458527,0,0 -F1,0.2780821917808219,0.2780821917808219,0,0 diff --git a/benchmark/realworld_data/result/swan_sf/rnnlstm_pipeline_0.25.csv b/benchmark/realworld_data/result/swan_sf/rnnlstm_pipeline_0.25.csv deleted file mode 100644 index 6e96a3e..0000000 --- a/benchmark/realworld_data/result/swan_sf/rnnlstm_pipeline_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.23726666666666665,0.23726666666666665,0,0 -RECALL,0.2492296918767507,0.2492296918767507,0,0 -F1_MACRO,0.49940548471969237,0.49940548471969237,0,0 -F1,0.24310109289617488,0.24310109289617488,0,0 diff --git a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.01.csv b/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.01.csv deleted file mode 100644 index 67ad19a..0000000 --- a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.3917748917748918,0.3917748917748918,0,0 -RECALL,0.3146002317497103,0.3146002317497103,0,0 -F1_MACRO,0.6707878361396251,0.6707878361396251,0,0 -F1,0.3489717223650386,0.3489717223650386,0,0 diff --git a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.05.csv b/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.05.csv deleted file mode 100644 index cc56d61..0000000 --- a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.13138896910193473,0.13138896910193473,0,0 -RECALL,0.5272305909617613,0.5272305909617613,0,0 -F1_MACRO,0.5924502465920783,0.5924502465920783,0,0 -F1,0.21035598705501615,0.21035598705501615,0,0 diff --git a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.1.csv b/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.1.csv deleted file mode 100644 index 104e9e6..0000000 --- a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.07530142227997978,0.07530142227997978,0,0 -RECALL,0.604287369640788,0.604287369640788,0,0 -F1_MACRO,0.5411588299433705,0.5411588299433705,0,0 -F1,0.13391538807215767,0.13391538807215767,0,0 diff --git a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.15.csv b/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.15.csv deleted file mode 100644 index df39bcf..0000000 --- a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.053713240602589404,0.053713240602589404,0,0 -RECALL,0.6465816917728853,0.6465816917728853,0,0 -F1_MACRO,0.5097743421368182,0.5097743421368182,0,0 -F1,0.09918677509665379,0.09918677509665379,0,0 diff --git a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.2.csv b/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.2.csv deleted file mode 100644 index 6d37114..0000000 --- a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.04237961158039131,0.04237961158039131,0,0 -RECALL,0.6801853997682503,0.6801853997682503,0,0 -F1_MACRO,0.48521209462391385,0.48521209462391385,0,0 -F1,0.07978795704770966,0.07978795704770966,0,0 diff --git a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.25.csv b/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.25.csv deleted file mode 100644 index 3716722..0000000 --- a/benchmark/realworld_data/result/water_quality/AutoRegODetector_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.03549150976088714,0.03549150976088714,0,0 -RECALL,0.7120509849362688,0.7120509849362688,0,0 -F1_MACRO,0.46339164783606834,0.46339164783606834,0,0 -F1,0.06761291742311712,0.06761291742311712,0,0 diff --git a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.01.csv b/benchmark/realworld_data/result/water_quality/ae_pipeline_0.01.csv deleted file mode 100644 index 418cd50..0000000 --- a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.4235209235209235,0.4235209235209235,0,0 -RECALL,0.34009269988412516,0.34009269988412516,0,0 -F1_MACRO,0.6850872785975288,0.6850872785975288,0,0 -F1,0.37724935732647813,0.37724935732647813,0,0 diff --git a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.05.csv b/benchmark/realworld_data/result/water_quality/ae_pipeline_0.05.csv deleted file mode 100644 index 4956020..0000000 --- a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.15521224371931852,0.15521224371931852,0,0 -RECALL,0.6228273464658169,0.6228273464658169,0,0 -F1_MACRO,0.6121357586858451,0.6121357586858451,0,0 -F1,0.24849745723532135,0.24849745723532135,0,0 diff --git a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.1.csv b/benchmark/realworld_data/result/water_quality/ae_pipeline_0.1.csv deleted file mode 100644 index b80b7a8..0000000 --- a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.09240542881894312,0.09240542881894312,0,0 -RECALL,0.7415990730011588,0.7415990730011588,0,0 -F1_MACRO,0.557272718278877,0.557272718278877,0,0 -F1,0.16433431762742332,0.16433431762742332,0,0 diff --git a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.15.csv b/benchmark/realworld_data/result/water_quality/ae_pipeline_0.15.csv deleted file mode 100644 index 5427754..0000000 --- a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.06511695062084898,0.06511695062084898,0,0 -RECALL,0.7838933951332561,0.7838933951332561,0,0 -F1_MACRO,0.5212325773683018,0.5212325773683018,0,0 -F1,0.12024528972627088,0.12024528972627088,0,0 diff --git a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.2.csv b/benchmark/realworld_data/result/water_quality/ae_pipeline_0.2.csv deleted file mode 100644 index 0634af8..0000000 --- a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.052916546347097894,0.052916546347097894,0,0 -RECALL,0.8493626882966396,0.8493626882966396,0,0 -F1_MACRO,0.4963060160507054,0.4963060160507054,0,0 -F1,0.09962623173632348,0.09962623173632348,0,0 diff --git a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.25.csv b/benchmark/realworld_data/result/water_quality/ae_pipeline_0.25.csv deleted file mode 100644 index e42d12f..0000000 --- a/benchmark/realworld_data/result/water_quality/ae_pipeline_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.04536529021079989,0.04536529021079989,0,0 -RECALL,0.910196987253766,0.910196987253766,0,0 -F1_MACRO,0.47421296213078756,0.47421296213078756,0,0 -F1,0.08642314886126086,0.08642314886126086,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.01.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_0.01.csv deleted file mode 100644 index 7ef252c..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.4393939393939394,0.4393939393939394,0,0 -RECALL,0.35283893395133253,0.35283893395133253,0,0 -F1_MACRO,0.6922369998264808,0.6922369998264808,0,0 -F1,0.39138817480719795,0.39138817480719795,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.05.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_0.05.csv deleted file mode 100644 index 88e70b7..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.17398209644816634,0.17398209644816634,0,0 -RECALL,0.6981460023174971,0.6981460023174971,0,0 -F1_MACRO,0.6276455560930551,0.6276455560930551,0,0 -F1,0.27854831252889506,0.27854831252889506,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.1.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_0.1.csv deleted file mode 100644 index 7aab5f7..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.10396361273554255,0.10396361273554255,0,0 -RECALL,0.8342989571263036,0.8342989571263036,0,0 -F1_MACRO,0.5681634914973667,0.5681634914973667,0,0 -F1,0.18488797586184758,0.18488797586184758,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.15.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_0.15.csv deleted file mode 100644 index 2ef0b70..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.07296178650495716,0.07296178650495716,0,0 -RECALL,0.8783314020857474,0.8783314020857474,0,0 -F1_MACRO,0.5291161100371538,0.5291161100371538,0,0 -F1,0.13473160327052966,0.13473160327052966,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.2.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_0.2.csv deleted file mode 100644 index 52fc1f4..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.05941380306092983,0.05941380306092983,0,0 -RECALL,0.9536500579374276,0.9536500579374276,0,0 -F1_MACRO,0.5031491677686368,0.5031491677686368,0,0 -F1,0.11185864763846415,0.11185864763846415,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.25.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_0.25.csv deleted file mode 100644 index 511b203..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.04764654923476754,0.04764654923476754,0,0 -RECALL,0.9559675550405562,0.9559675550405562,0,0 -F1_MACRO,0.4767141469318754,0.4767141469318754,0,0 -F1,0.09076906150291561,0.09076906150291561,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.01.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.01.csv deleted file mode 100644 index e03df1f..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.3924963924963925,0.3924963924963925,0,0 -RECALL,0.31517960602549244,0.31517960602549244,0,0 -F1_MACRO,0.6711128234682138,0.6711128234682138,0,0 -F1,0.3496143958868894,0.3496143958868894,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.05.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.05.csv deleted file mode 100644 index 7843599..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.14192896332659544,0.14192896332659544,0,0 -RECALL,0.5695249130938587,0.5695249130938587,0,0 -F1_MACRO,0.6011595943668963,0.6011595943668963,0,0 -F1,0.2272306981044845,0.2272306981044845,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.1.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.1.csv deleted file mode 100644 index 2ff1393..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.09587063239965347,0.09587063239965347,0,0 -RECALL,0.7694090382387022,0.7694090382387022,0,0 -F1_MACRO,0.5605375684129397,0.5605375684129397,0,0 -F1,0.17049685453845165,0.17049685453845165,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.15.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.15.csv deleted file mode 100644 index 5286b97..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.06915968813167774,0.06915968813167774,0,0 -RECALL,0.8325608342989571,0.8325608342989571,0,0 -F1_MACRO,0.5252952567804708,0.5252952567804708,0,0 -F1,0.12771062922147175,0.12771062922147175,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.2.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.2.csv deleted file mode 100644 index 914eab3..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.05107565694484551,0.05107565694484551,0,0 -RECALL,0.8198146002317497,0.8198146002317497,0,0 -F1_MACRO,0.4943671230639582,0.4943671230639582,0,0 -F1,0.0961603805640503,0.0961603805640503,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.25.csv b/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.25.csv deleted file mode 100644 index e7220c6..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_iforest_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.046404851285012996,0.046404851285012996,0,0 -RECALL,0.9310544611819235,0.9310544611819235,0,0 -F1_MACRO,0.4753527425464731,0.4753527425464731,0,0 -F1,0.0884035647485972,0.0884035647485972,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.01.csv b/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.01.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.05.csv b/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.05.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.1.csv b/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.1.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.15.csv b/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.15.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.2.csv b/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.2.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.25.csv b/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.25.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_mogaal_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.01.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.01.csv deleted file mode 100644 index f5fe1b1..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.4805194805194805,0.4805194805194805,0,0 -RECALL,0.3858632676709154,0.3858632676709154,0,0 -F1_MACRO,0.7107612775560378,0.7107612775560378,0,0 -F1,0.42802056555269924,0.42802056555269924,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.05.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.05.csv deleted file mode 100644 index 7ca50d7..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.18509962460294543,0.18509962460294543,0,0 -RECALL,0.7427578215527231,0.7427578215527231,0,0 -F1_MACRO,0.6368321284034797,0.6368321284034797,0,0 -F1,0.29634766527970413,0.29634766527970413,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.1.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.1.csv deleted file mode 100644 index 00284ec..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.10085186254692463,0.10085186254692463,0,0 -RECALL,0.8093858632676709,0.8093858632676709,0,0 -F1_MACRO,0.5652307904806547,0.5652307904806547,0,0 -F1,0.17935550134805497,0.17935550134805497,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.15.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.15.csv deleted file mode 100644 index babd3d7..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.07146982385215131,0.07146982385215131,0,0 -RECALL,0.8603707995365005,0.8603707995365005,0,0 -F1_MACRO,0.5276167878731389,0.5276167878731389,0,0 -F1,0.13197653750444366,0.13197653750444366,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.2.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.2.csv deleted file mode 100644 index 4f5b89c..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.05670661276349986,0.05670661276349986,0,0 -RECALL,0.910196987253766,0.910196987253766,0,0 -F1_MACRO,0.500297854552832,0.500297854552832,0,0 -F1,0.10676180767923887,0.10676180767923887,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.25.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.25.csv deleted file mode 100644 index a682dfe..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.04683800173260179,0.04683800173260179,0,0 -RECALL,0.9397450753186558,0.9397450753186558,0,0 -F1_MACRO,0.47582765105300884,0.47582765105300884,0,0 -F1,0.08922873803498733,0.08922873803498733,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.01.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.01.csv deleted file mode 100644 index 014fdba..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.005772005772005772,0.005772005772005772,0,0 -RECALL,0.004634994206257242,0.004634994206257242,0,0 -F1_MACRO,0.4969196153446591,0.4969196153446591,0,0 -F1,0.005141388174807198,0.005141388174807198,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.05.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.05.csv deleted file mode 100644 index 03a189d..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.008808664259927797,0.008808664259927797,0,0 -RECALL,0.03534183082271147,0.03534183082271147,0,0 -F1_MACRO,0.4911620760519917,0.4911620760519917,0,0 -F1,0.014102415905675644,0.014102415905675644,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.1.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.1.csv deleted file mode 100644 index c69aa64..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.020285879295408604,0.020285879295408604,0,0 -RECALL,0.16280417149478563,0.16280417149478563,0,0 -F1_MACRO,0.4893230248636977,0.4893230248636977,0,0 -F1,0.03607651816664527,0.03607651816664527,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.15.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.15.csv deleted file mode 100644 index ed4bc61..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.021224371931850998,0.021224371931850998,0,0 -RECALL,0.25550405561993045,0.25550405561993045,0,0 -F1_MACRO,0.4771234866076077,0.4771234866076077,0,0 -F1,0.03919303234980448,0.03919303234980448,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.2.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.2.csv deleted file mode 100644 index b0ce207..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.021260467802483397,0.021260467802483397,0,0 -RECALL,0.34125144843568944,0.34125144843568944,0,0 -F1_MACRO,0.46296466018056187,0.46296466018056187,0,0 -F1,0.0400271831464492,0.0400271831464492,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.25.csv b/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.25.csv deleted file mode 100644 index 94d3157..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_ocsvm_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.018047935316199828,0.018047935316199828,0,0 -RECALL,0.36210892236384706,0.36210892236384706,0,0 -F1_MACRO,0.4442620656519367,0.4442620656519367,0,0 -F1,0.03438222026625592,0.03438222026625592,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.01.csv b/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.01.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.05.csv b/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.05.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.1.csv b/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.1.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.15.csv b/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.15.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.2.csv b/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.2.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.25.csv b/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.25.csv deleted file mode 100644 index e3c1563..0000000 --- a/benchmark/realworld_data/result/water_quality/pyod_sogaal_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49686542009908613,0.49686542009908613,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.01.csv b/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.01.csv deleted file mode 100644 index 0bc91b7..0000000 --- a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.3427128427128427,0.3427128427128427,0,0 -RECALL,0.27520278099652373,0.27520278099652373,0,0 -F1_MACRO,0.648688697795592,0.648688697795592,0,0 -F1,0.30526992287917737,0.30526992287917737,0,0 diff --git a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.05.csv b/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.05.csv deleted file mode 100644 index c0dcc9e..0000000 --- a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.12777938203869477,0.12777938203869477,0,0 -RECALL,0.5127462340672074,0.5127462340672074,0,0 -F1_MACRO,0.5894675932445379,0.5894675932445379,0,0 -F1,0.2045769764216366,0.2045769764216366,0,0 diff --git a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.1.csv b/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.1.csv deleted file mode 100644 index 7721548..0000000 --- a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.08583598036384638,0.08583598036384638,0,0 -RECALL,0.6888760139049827,0.6888760139049827,0,0 -F1_MACRO,0.5510831065663833,0.5510831065663833,0,0 -F1,0.15265117473359868,0.15265117473359868,0,0 diff --git a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.15.csv b/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.15.csv deleted file mode 100644 index c291076..0000000 --- a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.06449128886322071,0.06449128886322071,0,0 -RECALL,0.776361529548088,0.776361529548088,0,0 -F1_MACRO,0.5206038293640374,0.5206038293640374,0,0 -F1,0.1190899395662993,0.1190899395662993,0,0 diff --git a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.2.csv b/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.2.csv deleted file mode 100644 index cdea17d..0000000 --- a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.046455385503898355,0.046455385503898355,0,0 -RECALL,0.7456546929316339,0.7456546929316339,0,0 -F1_MACRO,0.4895008818423181,0.4895008818423181,0,0 -F1,0.0874617737003058,0.0874617737003058,0,0 diff --git a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.25.csv b/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.25.csv deleted file mode 100644 index fd5b7d3..0000000 --- a/benchmark/realworld_data/result/water_quality/rnnlstm_pipeline_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.03456540571758591,0.03456540571758591,0,0 -RECALL,0.6935110081112399,0.6935110081112399,0,0 -F1_MACRO,0.4623719100344977,0.4623719100344977,0,0 -F1,0.06584882825393333,0.06584882825393333,0,0 diff --git a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.01.csv b/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.01.csv deleted file mode 100644 index 78022f3..0000000 --- a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49423166626557213,0.49423166626557213,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.05.csv b/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.05.csv deleted file mode 100644 index 96875f5..0000000 --- a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.003172365174480085,0.003172365174480085,0,0 -RECALL,0.012385321100917432,0.012385321100917432,0,0 -F1_MACRO,0.48639763030587113,0.48639763030587113,0,0 -F1,0.00505097745767468,0.00505097745767468,0,0 diff --git a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.1.csv b/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.1.csv deleted file mode 100644 index 1508f12..0000000 --- a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.008518387968511338,0.008518387968511338,0,0 -RECALL,0.06651376146788991,0.06651376146788991,0,0 -F1_MACRO,0.4781171935213461,0.4781171935213461,0,0 -F1,0.015102593479845848,0.015102593479845848,0,0 diff --git a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.15.csv b/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.15.csv deleted file mode 100644 index 8b98043..0000000 --- a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.011318685622527708,0.011318685622527708,0,0 -RECALL,0.13256880733944953,0.13256880733944953,0,0 -F1_MACRO,0.46704688516588494,0.46704688516588494,0,0 -F1,0.020856637679067584,0.020856637679067584,0,0 diff --git a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.2.csv b/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.2.csv deleted file mode 100644 index 64b3723..0000000 --- a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.012425096933380331,0.012425096933380331,0,0 -RECALL,0.19403669724770642,0.19403669724770642,0,0 -F1_MACRO,0.45353536004027395,0.45353536004027395,0,0 -F1,0.023354681978798586,0.023354681978798586,0,0 diff --git a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.25.csv b/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.25.csv deleted file mode 100644 index 3c42c4e..0000000 --- a/benchmark/realworld_data/result/web_attack/AutoRegODetector_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.015838326871107977,0.015838326871107977,0,0 -RECALL,0.3091743119266055,0.3091743119266055,0,0 -F1_MACRO,0.441709994878058,0.441709994878058,0,0 -F1,0.030133005476696097,0.030133005476696097,0,0 diff --git a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.01.csv b/benchmark/realworld_data/result/web_attack/ae_pipeline_0.01.csv deleted file mode 100644 index 78022f3..0000000 --- a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49423166626557213,0.49423166626557213,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.05.csv b/benchmark/realworld_data/result/web_attack/ae_pipeline_0.05.csv deleted file mode 100644 index 1911fe1..0000000 --- a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0019971804511278194,0.0019971804511278194,0,0 -RECALL,0.007798165137614679,0.007798165137614679,0,0 -F1_MACRO,0.4854302261092516,0.4854302261092516,0,0 -F1,0.0031799476243920682,0.0031799476243920682,0,0 diff --git a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.1.csv b/benchmark/realworld_data/result/web_attack/ae_pipeline_0.1.csv deleted file mode 100644 index 6405246..0000000 --- a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.005581340696786323,0.005581340696786323,0,0 -RECALL,0.04357798165137615,0.04357798165137615,0,0 -F1_MACRO,0.475359567050838,0.475359567050838,0,0 -F1,0.00989531795218999,0.00989531795218999,0,0 diff --git a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.15.csv b/benchmark/realworld_data/result/web_attack/ae_pipeline_0.15.csv deleted file mode 100644 index 7e1039e..0000000 --- a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.003916193459956922,0.003916193459956922,0,0 -RECALL,0.045871559633027525,0.045871559633027525,0,0 -F1_MACRO,0.45961892351712236,0.45961892351712236,0,0 -F1,0.007216308858019124,0.007216308858019124,0,0 diff --git a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.2.csv b/benchmark/realworld_data/result/web_attack/ae_pipeline_0.2.csv deleted file mode 100644 index 2486342..0000000 --- a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0029665746343182755,0.0029665746343182755,0,0 -RECALL,0.0463302752293578,0.0463302752293578,0,0 -F1_MACRO,0.44358401381002427,0.44358401381002427,0,0 -F1,0.005576105559542869,0.005576105559542869,0,0 diff --git a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.25.csv b/benchmark/realworld_data/result/web_attack/ae_pipeline_0.25.csv deleted file mode 100644 index 241ecf7..0000000 --- a/benchmark/realworld_data/result/web_attack/ae_pipeline_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0025142158936040226,0.0025142158936040226,0,0 -RECALL,0.04908256880733945,0.04908256880733945,0,0 -F1_MACRO,0.4271120501538946,0.4271120501538946,0,0 -F1,0.004783405605972551,0.004783405605972551,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.01.csv b/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.01.csv deleted file mode 100644 index 3c9d2dd..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.011743981209630064,0.011743981209630064,0,0 -RECALL,0.009174311926605505,0.009174311926605505,0,0 -F1_MACRO,0.4994417443879974,0.4994417443879974,0,0 -F1,0.010301313417460727,0.010301313417460727,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.05.csv b/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.05.csv deleted file mode 100644 index d8c7957..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.010808270676691729,0.010808270676691729,0,0 -RECALL,0.04220183486238532,0.04220183486238532,0,0 -F1_MACRO,0.49267224769713036,0.49267224769713036,0,0 -F1,0.017209128320239433,0.017209128320239433,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.1.csv b/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.1.csv deleted file mode 100644 index e631628..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.010926393702637607,0.010926393702637607,0,0 -RECALL,0.0853211009174312,0.0853211009174312,0,0 -F1_MACRO,0.48037785823200785,0.48037785823200785,0,0 -F1,0.019371973129198562,0.019371973129198562,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.15.csv b/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.15.csv deleted file mode 100644 index e58da0e..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.01198355198746818,0.01198355198746818,0,0 -RECALL,0.14036697247706423,0.14036697247706423,0,0 -F1_MACRO,0.4677104010207002,0.4677104010207002,0,0 -F1,0.022081905105538518,0.022081905105538518,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.2.csv b/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.2.csv deleted file mode 100644 index a9dce82..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.011836926511190742,0.011836926511190742,0,0 -RECALL,0.1848623853211009,0.1848623853211009,0,0 -F1_MACRO,0.45291321810879026,0.45291321810879026,0,0 -F1,0.02224921327223541,0.02224921327223541,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.25.csv b/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.25.csv deleted file mode 100644 index bc8e521..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ae_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.012289111330419662,0.012289111330419662,0,0 -RECALL,0.23990825688073394,0.23990825688073394,0,0 -F1_MACRO,0.43781735008813133,0.43781735008813133,0,0 -F1,0.023380571326389196,0.023380571326389196,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.01.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_0.01.csv deleted file mode 100644 index 9b61198..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.009395184967704051,0.009395184967704051,0,0 -RECALL,0.007339449541284404,0.007339449541284404,0,0 -F1_MACRO,0.49839972876351224,0.49839972876351224,0,0 -F1,0.008241050733968582,0.008241050733968582,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.05.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_0.05.csv deleted file mode 100644 index c317784..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.010338345864661654,0.010338345864661654,0,0 -RECALL,0.04036697247706422,0.04036697247706422,0,0 -F1_MACRO,0.49228600654577687,0.49228600654577687,0,0 -F1,0.01646090534979424,0.01646090534979424,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.1.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_0.1.csv deleted file mode 100644 index 91ec6f6..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.00569850781341793,0.00569850781341793,0,0 -RECALL,0.0444954128440367,0.0444954128440367,0,0 -F1_MACRO,0.47546804221942396,0.47546804221942396,0,0 -F1,0.01010311425893136,0.01010311425893136,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.15.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_0.15.csv deleted file mode 100644 index 75b688b..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0038787023977433005,0.0038787023977433005,0,0 -RECALL,0.04541284403669725,0.04541284403669725,0,0 -F1_MACRO,0.4596001955454938,0.4596001955454938,0,0 -F1,0.007146982385215131,0.007146982385215131,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.2.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_0.2.csv deleted file mode 100644 index 64a8b78..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0030253186864829936,0.0030253186864829936,0,0 -RECALL,0.04724770642201835,0.04724770642201835,0,0 -F1_MACRO,0.4436457966199498,0.4436457966199498,0,0 -F1,0.005686523491415006,0.005686523491415006,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.25.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_0.25.csv deleted file mode 100644 index 520e84e..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.004323714634834101,0.004323714634834101,0,0 -RECALL,0.08440366972477065,0.08440366972477065,0,0 -F1_MACRO,0.4290976327340555,0.4290976327340555,0,0 -F1,0.008226037195994277,0.008226037195994277,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.01.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.01.csv deleted file mode 100644 index 5a0c752..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.005284791544333529,0.005284791544333529,0,0 -RECALL,0.004128440366972477,0.004128440366972477,0,0 -F1_MACRO,0.49657620142066344,0.49657620142066344,0,0 -F1,0.004635591037857326,0.004635591037857326,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.05.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.05.csv deleted file mode 100644 index db9480b..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.005521616541353383,0.005521616541353383,0,0 -RECALL,0.021559633027522937,0.021559633027522937,0,0 -F1_MACRO,0.4883270347444031,0.4883270347444031,0,0 -F1,0.008791619902731014,0.008791619902731014,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.1.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.1.csv deleted file mode 100644 index b4fae40..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.007460494624919227,0.007460494624919227,0,0 -RECALL,0.05825688073394496,0.05825688073394496,0,0 -F1_MACRO,0.4771217691911378,0.4771217691911378,0,0 -F1,0.013227099932302245,0.013227099932302245,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.15.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.15.csv deleted file mode 100644 index 7349f05..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.00798903465831212,0.00798903465831212,0,0 -RECALL,0.09357798165137615,0.09357798165137615,0,0 -F1_MACRO,0.4637039412859189,0.4637039412859189,0,0 -F1,0.014721270070359014,0.014721270070359014,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.2.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.2.csv deleted file mode 100644 index 0f90e76..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.010779533572225813,0.010779533572225813,0,0 -RECALL,0.168348623853211,0.168348623853211,0,0 -F1_MACRO,0.4518011275301294,0.4518011275301294,0,0 -F1,0.020261690498536964,0.020261690498536964,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.25.csv b/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.25.csv deleted file mode 100644 index 6dc5d35..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_iforest_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.011302222848818084,0.011302222848818084,0,0 -RECALL,0.22064220183486238,0.22064220183486238,0,0 -F1_MACRO,0.4367365265370786,0.4367365265370786,0,0 -F1,0.02150297286423175,0.02150297286423175,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.01.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.01.csv deleted file mode 100644 index 78022f3..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49423166626557213,0.49423166626557213,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.05.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.05.csv deleted file mode 100644 index 3d6f197..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.002350452462098954,0.002350452462098954,0,0 -RECALL,0.009174311926605505,0.009174311926605505,0,0 -F1_MACRO,0.4857251274764156,0.4857251274764156,0,0 -F1,0.003742164842361306,0.003742164842361306,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.1.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.1.csv deleted file mode 100644 index 6405246..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.005581340696786323,0.005581340696786323,0,0 -RECALL,0.04357798165137615,0.04357798165137615,0,0 -F1_MACRO,0.475359567050838,0.475359567050838,0,0 -F1,0.00989531795218999,0.00989531795218999,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.15.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.15.csv deleted file mode 100644 index 7e1039e..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.003916193459956922,0.003916193459956922,0,0 -RECALL,0.045871559633027525,0.045871559633027525,0,0 -F1_MACRO,0.45961892351712236,0.45961892351712236,0,0 -F1,0.007216308858019124,0.007216308858019124,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.2.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.2.csv deleted file mode 100644 index 023e2a6..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.002937202608235916,0.002937202608235916,0,0 -RECALL,0.045871559633027525,0.045871559633027525,0,0 -F1_MACRO,0.4435531224050615,0.4435531224050615,0,0 -F1,0.005520896593606802,0.005520896593606802,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.25.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.25.csv deleted file mode 100644 index 241ecf7..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0025142158936040226,0.0025142158936040226,0,0 -RECALL,0.04908256880733945,0.04908256880733945,0,0 -F1_MACRO,0.4271120501538946,0.4271120501538946,0,0 -F1,0.004783405605972551,0.004783405605972551,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.01.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.01.csv deleted file mode 100644 index 762878d..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49677188584536985,0.49677188584536985,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.05.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.05.csv deleted file mode 100644 index 762878d..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49677188584536985,0.49677188584536985,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.1.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.1.csv deleted file mode 100644 index 762878d..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49677188584536985,0.49677188584536985,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.15.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.15.csv deleted file mode 100644 index 762878d..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49677188584536985,0.49677188584536985,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.2.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.2.csv deleted file mode 100644 index 762878d..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49677188584536985,0.49677188584536985,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.25.csv b/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.25.csv deleted file mode 100644 index 762878d..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_ocsvm_subseq_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49677188584536985,0.49677188584536985,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.01.csv b/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.01.csv deleted file mode 100644 index 3049e6c..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.01.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49677783624313443,0.49677783624313443,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.05.csv b/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.05.csv deleted file mode 100644 index 3049e6c..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.05.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49677783624313443,0.49677783624313443,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.1.csv b/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.1.csv deleted file mode 100644 index 3049e6c..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.1.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0,0.0,0,0 -RECALL,0.0,0.0,0,0 -F1_MACRO,0.49677783624313443,0.49677783624313443,0,0 -F1,0.0,0.0,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.15.csv b/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.15.csv deleted file mode 100644 index 84f9005..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.00411688731030029,0.00411688731030029,0,0 -RECALL,0.046788990825688076,0.046788990825688076,0,0 -F1_MACRO,0.46111809410999877,0.46111809410999877,0,0 -F1,0.007567888410743432,0.007567888410743432,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.2.csv b/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.2.csv deleted file mode 100644 index 6c85e2e..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0010365149406225012,0.0010365149406225012,0,0 -RECALL,0.016055045871559634,0.016055045871559634,0,0 -F1_MACRO,0.44206522750347277,0.44206522750347277,0,0 -F1,0.0019473113194425126,0.0019473113194425126,0,0 diff --git a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.25.csv b/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.25.csv deleted file mode 100644 index be7e2f0..0000000 --- a/benchmark/realworld_data/result/web_attack/pyod_sogaal_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.0025840411532479964,0.0025840411532479964,0,0 -RECALL,0.04954128440366973,0.04954128440366973,0,0 -F1_MACRO,0.42866012520735686,0.42866012520735686,0,0 -F1,0.004911881750994884,0.004911881750994884,0,0 diff --git a/benchmark/realworld_data/result/web_attack/rnnlstm_pipeline_0.15.csv b/benchmark/realworld_data/result/web_attack/rnnlstm_pipeline_0.15.csv deleted file mode 100644 index 4cc80f0..0000000 --- a/benchmark/realworld_data/result/web_attack/rnnlstm_pipeline_0.15.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.016134717055022518,0.016134717055022518,0,0 -RECALL,0.1889908256880734,0.1889908256880734,0,0 -F1_MACRO,0.4718739768235122,0.4718739768235122,0,0 -F1,0.029731192495038788,0.029731192495038788,0,0 diff --git a/benchmark/realworld_data/result/web_attack/rnnlstm_pipeline_0.2.csv b/benchmark/realworld_data/result/web_attack/rnnlstm_pipeline_0.2.csv deleted file mode 100644 index ba76d68..0000000 --- a/benchmark/realworld_data/result/web_attack/rnnlstm_pipeline_0.2.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.02208776361393409,0.02208776361393409,0,0 -RECALL,0.344954128440367,0.344954128440367,0,0 -F1_MACRO,0.4636943184408079,0.4636943184408079,0,0 -F1,0.04151714238392315,0.04151714238392315,0,0 diff --git a/benchmark/realworld_data/result/web_attack/rnnlstm_pipeline_0.25.csv b/benchmark/realworld_data/result/web_attack/rnnlstm_pipeline_0.25.csv deleted file mode 100644 index 55fb789..0000000 --- a/benchmark/realworld_data/result/web_attack/rnnlstm_pipeline_0.25.csv +++ /dev/null @@ -1,5 +0,0 @@ -metric,value,normalized,randomSeed,fold -PRECISION,0.02227548287043564,0.02227548287043564,0,0 -RECALL,0.43486238532110094,0.43486238532110094,0,0 -F1_MACRO,0.44875425506902245,0.44875425506902245,0,0 -F1,0.04238007957441102,0.04238007957441102,0,0 diff --git a/benchmark/realworld_data/run.sh b/benchmark/realworld_data/run.sh deleted file mode 100644 index 682faaa..0000000 --- a/benchmark/realworld_data/run.sh +++ /dev/null @@ -1,36 +0,0 @@ -#!/bin/bash - -data="creditcard web_attack water_quality swan_sf" - -simple_pipelines=$(ls pipelines/simple) -subseq_pipelines=$(ls pipelines/subseq) - -for d in $data -do - for p in $subseq_pipelines - do - python run_pipeline.py --pipeline_path pipelines/subseq/$p --data_path ./data/$d.csv - done - for p in $simple_pipelines - do - python run_pipeline.py --pipeline_path pipelines/simple/$p --data_path ./data/$d.csv - done -done - -for d in $data -do - rnn_pipelines=$(ls pipelines/RNN_LSTM/$d) - for p in $rnn_pipelines - do - python run_pipeline.py --pipeline_path pipelines/RNN_LSTM/$d/$p --data_path ./data/$d.csv - done -done - -for d in $data -do - ae_pipelines=$(ls pipelines/AE/$d) - for p in $ae_pipelines - do - tsp python run_pipeline.py --pipeline_path pipelines/AE/$d/$p --data_path ./data/$d.csv - done -done diff --git a/benchmark/realworld_data/run_ae.sh b/benchmark/realworld_data/run_ae.sh deleted file mode 100644 index 21b1429..0000000 --- a/benchmark/realworld_data/run_ae.sh +++ /dev/null @@ -1,13 +0,0 @@ -#!/bin/bash - -data="swan_sf creditcard web_attack water_quality" - - -for d in $data -do - ae_pipelines=$(ls pipelines/AE/$d) - for p in $ae_pipelines - do - tsp python run_pipeline.py --pipeline_path pipelines/AE/$d/$p --data_path ./data/$d.csv - done -done diff --git a/benchmark/realworld_data/run_pipeline.py b/benchmark/realworld_data/run_pipeline.py deleted file mode 100644 index 1e4f109..0000000 --- a/benchmark/realworld_data/run_pipeline.py +++ /dev/null @@ -1,52 +0,0 @@ -import sys -import argparse -import os -import pandas as pd -from warnings import filterwarnings -filterwarnings("ignore") - -from tods import generate_dataset, load_pipeline, evaluate_pipeline - -this_path = os.path.dirname(os.path.abspath(__file__)) -#default_data_path = os.path.join(this_path, './data/web_attack.csv') -#default_data_path = os.path.join(this_path, './data/swan_sf.csv') -default_data_path = os.path.join(this_path, './data/shuttle.csv') - -parser = argparse.ArgumentParser(description='Arguments for running predefined pipelin.') -parser.add_argument('--data_path', type=str, default=default_data_path, - help='Input the path of the input data table') -parser.add_argument('--target_index', type=int, default=0, - help='Index of the ground truth (for evaluation)') -parser.add_argument('--metric', type=str, default='ALL', - help='Evaluation Metric (F1, F1_MACRO, RECALL, PRECISION, ALL)') -parser.add_argument('--pipeline_path', - default=os.path.join(this_path, './pipeline2/autoencoder_pipeline.json'), - help='Input the path of the pre-built pipeline description') - -args = parser.parse_args() - -table_path = args.data_path -target_index = args.target_index # what column is the target -metric = args.metric # F1 on both label 0 and 1 -pipeline_path = args.pipeline_path - -output_name = pipeline_path.split("/")[-1][:-5] -output_folder = table_path.split("/")[-1].split(".")[0] - -# Read data and generate dataset -df = pd.read_csv(table_path) -dataset = generate_dataset(df, target_index) - -# Load the default pipeline -pipeline = load_pipeline(pipeline_path) - -# Run the pipeline -pipeline_result = evaluate_pipeline(dataset, pipeline, metric) -attrs = pipeline_result.__dict__ -#print(attrs) -pipeline_result.scores.to_csv("result/"+output_folder+"/"+output_name+".csv") -#print(pipeline_result.scores) - -#print(pipeline_result.scores) -#raise pipeline_result.error - diff --git a/benchmark/realworld_data/run_rnn.sh b/benchmark/realworld_data/run_rnn.sh deleted file mode 100644 index 1962476..0000000 --- a/benchmark/realworld_data/run_rnn.sh +++ /dev/null @@ -1,12 +0,0 @@ -#!/bin/bash - -data="swan_sf creditcard web_attack water_quality" - -for d in $data -do - rnn_pipelines=$(ls pipelines/RNN_LSTM/$d) - for p in $rnn_pipelines - do - python run_pipeline.py --pipeline_path pipelines/RNN_LSTM/$d/$p --data_path ./data/$d.csv - done -done diff --git a/benchmark/realworld_data/test_pipeline.py b/benchmark/realworld_data/test_pipeline.py deleted file mode 100644 index 2b499c4..0000000 --- a/benchmark/realworld_data/test_pipeline.py +++ /dev/null @@ -1,49 +0,0 @@ -import sys -import argparse -import os -import pandas as pd -from warnings import filterwarnings -filterwarnings("ignore") - -from tods import generate_dataset, load_pipeline, evaluate_pipeline - -this_path = os.path.dirname(os.path.abspath(__file__)) -#default_data_path = os.path.join(this_path, './data/web_attack.csv') -#default_data_path = os.path.join(this_path, './data/swan_sf.csv') -default_data_path = os.path.join(this_path, './data/shuttle.csv') - -parser = argparse.ArgumentParser(description='Arguments for running predefined pipelin.') -parser.add_argument('--data_path', type=str, default=default_data_path, - help='Input the path of the input data table') -parser.add_argument('--target_index', type=int, default=0, - help='Index of the ground truth (for evaluation)') -parser.add_argument('--metric', type=str, default='ALL', - help='Evaluation Metric (F1, F1_MACRO, RECALL, PRECISION, ALL)') -parser.add_argument('--pipeline_path', - default=os.path.join(this_path, './pipeline2/autoencoder_pipeline.json'), - help='Input the path of the pre-built pipeline description') - -args = parser.parse_args() - -table_path = args.data_path -target_index = args.target_index # what column is the target -metric = args.metric # F1 on both label 0 and 1 -pipeline_path = args.pipeline_path - -output_name = pipeline_path.split("/")[-1][:-5] -output_folder = table_path.split("/")[-1].split(".")[0] - -# Read data and generate dataset -df = pd.read_csv(table_path) -dataset = generate_dataset(df, target_index) - -# Load the default pipeline -pipeline = load_pipeline(pipeline_path) - -# Run the pipeline -pipeline_result = evaluate_pipeline(dataset, pipeline, metric) -attrs = pipeline_result.__dict__ -print(pipeline_result) -#print(attrs) -raise pipeline_result.error[0] - diff --git a/benchmark/synthetic/Generator/multivariate_generator.py b/benchmark/synthetic/Generator/multivariate_generator.py deleted file mode 100644 index abab56c..0000000 --- a/benchmark/synthetic/Generator/multivariate_generator.py +++ /dev/null @@ -1,216 +0,0 @@ -import numpy as np -import matplotlib.pyplot as plt -import pandas as pd - -def series_segmentation(data, stepsize=1): - return np.split(data, np.where(np.diff(data) != stepsize)[0] + 1) - - -def sine(length, freq=0.04, coef=1.5, offset=0.0, noise_amp=0.05): - # timestamp = np.linspace(0, 10, length) - timestamp = np.arange(length) - value = np.sin(2 * np.pi * freq * timestamp) - if noise_amp != 0: - noise = np.random.normal(0, 1, length) - value = value + noise_amp * noise - value = coef * value + offset - return value - -def cosine(length, freq=0.04, coef=1.5, offset=0.0, noise_amp=0.05): - # timestamp = np.linspace(0, 10, length) - timestamp = np.arange(length) - value = np.cos(2 * np.pi * freq * timestamp) - if noise_amp != 0: - noise = np.random.normal(0, 1, length) - value = value + noise_amp * noise - value = coef * value + offset - return value - - -def square_sine(level=5, length=500, freq=0.04, coef=1.5, offset=0.0, noise_amp=0.05): - value = np.zeros(length) - for i in range(level): - value += 1 / (2 * i + 1) * sine(length=length, freq=freq * (2 * i + 1), coef=coef, offset=offset, noise_amp=noise_amp) - return value - - -def collective_global_synthetic(length, base, coef=1.5, noise_amp=0.005): - value = [] - norm = np.linalg.norm(base) - base = base / norm - num = int(length / len(base)) - for i in range(num): - value.extend(base) - residual = length - len(value) - value.extend(base[:residual]) - value = np.array(value) - noise = np.random.normal(0, 1, length) - value = coef * value + noise_amp * noise - return value - - -class MultivariateDataGenerator: - def __init__(self, dim, stream_length, behavior, behavior_config=None): - - self.dim = dim - self.STREAM_LENGTH = stream_length - self.behavior = behavior if behavior is not None else [sine] * dim - self.behavior_config = behavior_config if behavior_config is not None else [{}] * dim - - self.data = np.empty(shape=[0, stream_length],dtype=float) - self.label = None - self.data_origin = None - self.timestamp = np.arange(self.STREAM_LENGTH) - - self.generate_timeseries() - - def generate_timeseries(self): - for i in range(self.dim): - self.behavior_config[i]['length'] = self.STREAM_LENGTH - self.data = np.append(self.data, [self.behavior[i](**self.behavior_config[i])], axis=0) - self.data_origin = self.data.copy() - self.label = np.zeros(self.STREAM_LENGTH, dtype=int) - - def point_global_outliers(self, dim_no, ratio, factor, radius): - """ - Add point global outliers to original data - Args: - ratio: what ratio outliers will be added - factor: the larger, the outliers are farther from inliers - radius: the radius of collective outliers range - """ - position = (np.random.rand(round(self.STREAM_LENGTH * ratio)) * self.STREAM_LENGTH).astype(int) - maximum, minimum = max(self.data[dim_no]), min(self.data[dim_no]) - for i in position: - local_std = self.data_origin[dim_no][max(0, i - radius):min(i + radius, self.STREAM_LENGTH)].std() - self.data[dim_no][i] = self.data_origin[dim_no][i] * factor * local_std - if 0 <= self.data[dim_no][i] < maximum: self.data[dim_no][i] = maximum - if 0 > self.data[dim_no][i] > minimum: self.data[dim_no][i] = minimum - self.label[i] = 1 - - def point_contextual_outliers(self,dim_no, ratio, factor, radius): - """ - Add point contextual outliers to original data - Args: - ratio: what ratio outliers will be added - factor: the larger, the outliers are farther from inliers - Notice: point contextual outliers will not exceed the range of [min, max] of original data - radius: the radius of collective outliers range - """ - position = (np.random.rand(round(self.STREAM_LENGTH * ratio)) * self.STREAM_LENGTH).astype(int) - maximum, minimum = max(self.data[dim_no]), min(self.data[dim_no]) - for i in position: - local_std = self.data_origin[dim_no][max(0, i - radius):min(i + radius, self.STREAM_LENGTH)].std() - self.data[dim_no][i] = self.data_origin[dim_no][i] * factor * local_std - if self.data[dim_no][i] > maximum: self.data[dim_no][i]= maximum * min(0.95, abs(np.random.normal(0, 1))) - if self.data[dim_no][i] < minimum: self.data[dim_no][i] = minimum * min(0.95, abs(np.random.normal(0, 1))) - - self.label[i] = 1 - - def collective_global_outliers(self,dim_no, ratio, radius, option='square', coef=3., noise_amp=0.0, - level=5, freq=0.04, offset=0.0, # only used when option=='square' - base=[0.,]): # only used when option=='other' - """ - Add collective global outliers to original data - Args: - ratio: what ratio outliers will be added - radius: the radius of collective outliers range - option: if 'square': 'level' 'freq' and 'offset' are used to generate square sine wave - if 'other': 'base' is used to generate outlier shape - level: how many sine waves will square_wave synthesis - base: a list of values that we want to substitute inliers when we generate outliers - """ - position = (np.random.rand(round(self.STREAM_LENGTH * ratio / (2 * radius))) * self.STREAM_LENGTH).astype(int) - - valid_option = {'square', 'other'} - if option not in valid_option: - raise ValueError("'option' must be one of %r." % valid_option) - - if option == 'square': - sub_data = square_sine(level=level, length=self.STREAM_LENGTH, freq=freq, - coef=coef, offset=offset, noise_amp=noise_amp) - else: - sub_data = collective_global_synthetic(length=self.STREAM_LENGTH, base=base, - coef=coef, noise_amp=noise_amp) - for i in position: - start, end = max(0, i - radius), min(self.STREAM_LENGTH, i + radius) - self.data[dim_no][start:end] = sub_data[start:end] - self.label[start:end] = 1 - - def collective_trend_outliers(self,dim_no, ratio, factor, radius): - """ - Add collective trend outliers to original data - Args: - ratio: what ratio outliers will be added - factor: how dramatic will the trend be - radius: the radius of collective outliers range - """ - position = (np.random.rand(round(self.STREAM_LENGTH * ratio / (2 * radius))) * self.STREAM_LENGTH).astype(int) - for i in position: - start, end = max(0, i - radius), min(self.STREAM_LENGTH, i + radius) - slope = np.random.choice([-1, 1]) * factor * np.arange(end - start) - self.data[dim_no][start:end] = self.data_origin[dim_no][start:end] + slope - self.data[dim_no][end:] = self.data[dim_no][end:] + slope[-1] - self.label[start:end] = 1 - - def collective_seasonal_outliers(self,dim_no, ratio, factor, radius): - """ - Add collective seasonal outliers to original data - Args: - ratio: what ratio outliers will be added - factor: how many times will frequency multiple - radius: the radius of collective outliers range - """ - position = (np.random.rand(round(self.STREAM_LENGTH * ratio / (2 * radius))) * self.STREAM_LENGTH).astype(int) - seasonal_config = self.behavior_config[dim_no] - seasonal_config['freq'] = factor * self.behavior_config[dim_no]['freq'] - for i in position: - start, end = max(0, i - radius), min(self.STREAM_LENGTH, i + radius) - self.data[dim_no][start:end] = self.behavior[dim_no](**seasonal_config)[start:end] - self.label[start:end] = 1 - - - -if __name__ == '__main__': - np.random.seed(100) - - BEHAVIOR = [sine, cosine, sine, cosine, sine] - BEHAVIOR_CONFIG = [{'freq': 0.04, 'coef': 1.5, "offset": 0.0, 'noise_amp': 0.05}, - {'freq': 0.04, 'coef': 2.5, "offset": 0.0, 'noise_amp': 0.05}, - {'freq': 0.04, 'coef': 1.5, "offset": 0.0, 'noise_amp': 0.05}, - {'freq': 0.04, 'coef': 2.5, "offset": 2.0, 'noise_amp': 0.05}, - {'freq': 0.04, 'coef': 1.5, "offset": -2.0, 'noise_amp': 0.05},] - - - multivariate_data = MultivariateDataGenerator(dim=5, stream_length=400, behavior=BEHAVIOR, - behavior_config=BEHAVIOR_CONFIG) - - - multivariate_data.point_global_outliers(dim_no=0, ratio=0.05, factor=3.5, radius=5) - multivariate_data.point_contextual_outliers(dim_no=1, ratio=0.05, factor=2.5, radius=5) - multivariate_data.collective_global_outliers(dim_no=2, ratio=0.05, radius=5, option='square', coef=1.5, noise_amp=0.03, level=20, freq=0.04, offset=0.0) - multivariate_data.collective_seasonal_outliers(dim_no=3, ratio=0.05, factor=3, radius=5) - multivariate_data.collective_trend_outliers(dim_no=4, ratio=0.05, factor=0.5, radius=5) - - df = pd.DataFrame({'col_0': multivariate_data.data[0], - 'col_1': multivariate_data.data[1], - 'col_2': multivariate_data.data[2], - 'col_3': multivariate_data.data[3], - 'col_4': multivariate_data.data[4], - 'anomaly': multivariate_data.label}) - df.to_csv("/Users/apple/Desktop/tods/benchmark/multi_dataset/01234.csv", index=False) - - plt.figure(figsize=(10, 15)) - plt.subplot(511) - plt.plot(multivariate_data.timestamp, multivariate_data.data[0]) - plt.subplot(512) - plt.plot(multivariate_data.timestamp, multivariate_data.data[1]) - plt.subplot(513) - plt.plot(multivariate_data.timestamp, multivariate_data.data[2]) - plt.subplot(514) - plt.plot(multivariate_data.timestamp, multivariate_data.data[3]) - plt.subplot(515) - plt.plot(multivariate_data.timestamp, multivariate_data.data[4]) - - plt.savefig("/Users/apple/Desktop/tods/benchmark/multi_dataset/01234.jpg") - plt.show() diff --git a/benchmark/synthetic/Generator/univariate_generator.py b/benchmark/synthetic/Generator/univariate_generator.py deleted file mode 100644 index 572a0f6..0000000 --- a/benchmark/synthetic/Generator/univariate_generator.py +++ /dev/null @@ -1,195 +0,0 @@ -import numpy as np -import matplotlib.pyplot as plt -import pandas as pd - -def series_segmentation(data, stepsize=1): - return np.split(data, np.where(np.diff(data) != stepsize)[0] + 1) - - -def sine(length, freq=0.04, coef=1.5, offset=0.0, noise_amp=0.05): - # timestamp = np.linspace(0, 10, length) - timestamp = np.arange(length) - value = np.sin(2 * np.pi * freq * timestamp) - if noise_amp != 0: - noise = np.random.normal(0, 1, length) - value = value + noise_amp * noise - value = coef * value + offset - return value - - -def square_sine(level=5, length=500, freq=0.04, coef=1.5, offset=0.0, noise_amp=0.05): - value = np.zeros(length) - for i in range(level): - value += 1 / (2 * i + 1) * sine(length=length, freq=freq * (2 * i + 1), coef=coef, offset=offset, noise_amp=noise_amp) - return value - - -def collective_global_synthetic(length, base, coef=1.5, noise_amp=0.005): - value = [] - norm = np.linalg.norm(base) - base = base / norm - num = int(length / len(base)) - for i in range(num): - value.extend(base) - residual = length - len(value) - value.extend(base[:residual]) - value = np.array(value) - noise = np.random.normal(0, 1, length) - value = coef * value + noise_amp * noise - return value - - -class UnivariateDataGenerator: - def __init__(self, stream_length, behavior=sine, behavior_config=None): - - self.STREAM_LENGTH = stream_length - self.behavior = behavior - self.behavior_config = behavior_config if behavior_config is not None else {} - - self.data = None - self.label = None - self.data_origin = None - self.timestamp = np.arange(self.STREAM_LENGTH) - - self.generate_timeseries() - - def generate_timeseries(self): - self.behavior_config['length'] = self.STREAM_LENGTH - self.data = self.behavior(**self.behavior_config) - self.data_origin = self.data.copy() - self.label = np.zeros(self.STREAM_LENGTH, dtype=int) - - def point_global_outliers(self, ratio, factor, radius): - """ - Add point global outliers to original data - Args: - ratio: what ratio outliers will be added - factor: the larger, the outliers are farther from inliers - radius: the radius of collective outliers range - """ - position = (np.random.rand(round(self.STREAM_LENGTH * ratio)) * self.STREAM_LENGTH).astype(int) - maximum, minimum = max(self.data), min(self.data) - print(maximum, minimum) - for i in position: - local_std = self.data_origin[max(0, i - radius):min(i + radius, self.STREAM_LENGTH)].std() - self.data[i] = self.data_origin[i] * factor * local_std - if 0 <= self.data[i] < maximum: self.data[i] = maximum - if 0 > self.data[i] > minimum: self.data[i] = minimum - self.label[i] = 1 - - def point_contextual_outliers(self, ratio, factor, radius): - """ - Add point contextual outliers to original data - Args: - ratio: what ratio outliers will be added - factor: the larger, the outliers are farther from inliers - Notice: point contextual outliers will not exceed the range of [min, max] of original data - radius: the radius of collective outliers range - """ - position = (np.random.rand(round(self.STREAM_LENGTH * ratio)) * self.STREAM_LENGTH).astype(int) - maximum, minimum = max(self.data), min(self.data) - for i in position: - local_std = self.data_origin[max(0, i - radius):min(i + radius, self.STREAM_LENGTH)].std() - self.data[i] = self.data_origin[i] * factor * local_std - if self.data[i] > maximum: self.data[i] = maximum * min(0.95, abs(np.random.normal(0, 1))) - if self.data[i] < minimum: self.data[i] = minimum * min(0.95, abs(np.random.normal(0, 1))) - - self.label[i] = 1 - - def collective_global_outliers(self, ratio, radius, option='square', coef=3., noise_amp=0.0, - level=5, freq=0.04, offset=0.0, # only used when option=='square' - base=[0.,]): # only used when option=='other' - """ - Add collective global outliers to original data - Args: - ratio: what ratio outliers will be added - radius: the radius of collective outliers range - option: if 'square': 'level' 'freq' and 'offset' are used to generate square sine wave - if 'other': 'base' is used to generate outlier shape - level: how many sine waves will square_wave synthesis - base: a list of values that we want to substitute inliers when we generate outliers - """ - position = (np.random.rand(round(self.STREAM_LENGTH * ratio / (2 * radius))) * self.STREAM_LENGTH).astype(int) - - valid_option = {'square', 'other'} - if option not in valid_option: - raise ValueError("'option' must be one of %r." % valid_option) - - if option == 'square': - sub_data = square_sine(level=level, length=self.STREAM_LENGTH, freq=freq, - coef=coef, offset=offset, noise_amp=noise_amp) - else: - sub_data = collective_global_synthetic(length=self.STREAM_LENGTH, base=base, - coef=coef, noise_amp=noise_amp) - for i in position: - start, end = max(0, i - radius), min(self.STREAM_LENGTH, i + radius) - self.data[start:end] = sub_data[start:end] - self.label[start:end] = 1 - - def collective_trend_outliers(self, ratio, factor, radius): - """ - Add collective trend outliers to original data - Args: - ratio: what ratio outliers will be added - factor: how dramatic will the trend be - radius: the radius of collective outliers range - """ - position = (np.random.rand(round(self.STREAM_LENGTH * ratio / (2 * radius))) * self.STREAM_LENGTH).astype(int) - for i in position: - start, end = max(0, i - radius), min(self.STREAM_LENGTH, i + radius) - slope = np.random.choice([-1, 1]) * factor * np.arange(end - start) - self.data[start:end] = self.data_origin[start:end] + slope - self.data[end:] = self.data[end:] + slope[-1] - self.label[start:end] = 1 - - def collective_seasonal_outliers(self, ratio, factor, radius): - """ - Add collective seasonal outliers to original data - Args: - ratio: what ratio outliers will be added - factor: how many times will frequency multiple - radius: the radius of collective outliers range - """ - position = (np.random.rand(round(self.STREAM_LENGTH * ratio / (2 * radius))) * self.STREAM_LENGTH).astype(int) - seasonal_config = self.behavior_config - seasonal_config['freq'] = factor * self.behavior_config['freq'] - for i in position: - start, end = max(0, i - radius), min(self.STREAM_LENGTH, i + radius) - self.data[start:end] = self.behavior(**seasonal_config)[start:end] - self.label[start:end] = 1 - - -if __name__ == '__main__': - np.random.seed(100) - - BEHAVIOR_CONFIG = {'freq': 0.04, 'coef': 1.5, "offset": 0.0, 'noise_amp': 0.05} - BASE = [1.4529900e-01, 1.2820500e-01, 9.4017000e-02, 7.6923000e-02, 1.1111100e-01, 1.4529900e-01, 1.7948700e-01, - 2.1367500e-01, 2.1367500e-01] - - univariate_data = UnivariateDataGenerator(stream_length=200, behavior=sine, behavior_config=BEHAVIOR_CONFIG) - - - univariate_data.collective_global_outliers(ratio=0.05, radius=5, option='square', coef=1.5, noise_amp=0.04, - level=5, freq=0.04, - base=BASE, offset=0.0) - univariate_data.collective_trend_outliers(ratio=0.2, factor=0.5, radius=5) - univariate_data.collective_seasonal_outliers(ratio=0.05, factor=3, radius=5) - univariate_data.point_global_outliers(ratio=0.2, factor=6, radius=5) # to 0.2 - univariate_data.point_contextual_outliers(ratio=0.2, factor=3, radius=5) - - - plt.plot(univariate_data.timestamp, univariate_data.data) - outlier_idxs = np.where(univariate_data.label == 1)[0] - outliers = list(univariate_data.data[outlier_idxs]) - outcome = series_segmentation(outlier_idxs) - for outlier in outcome: - if len(outlier) == 1: - plt.plot(outlier, univariate_data.data[outlier], 'ro') - else: - if len(outlier) != 0: - plt.axvspan(outlier[0], outlier[-1], color='red', alpha=0.5) - plt.show() - - df = pd.DataFrame({'value': univariate_data.data, 'anomaly': univariate_data.label}) - df.to_csv("/Users/apple/Desktop/tods/benchmark/dataset/point_global_0.2.csv", index=False) - diff --git a/benchmark/synthetic/Pipeline/AutoEncoder/ae_pipeline_1416321641/ae_pipeline_1416321641_con0.05.json b/benchmark/synthetic/Pipeline/AutoEncoder/ae_pipeline_1416321641/ae_pipeline_1416321641_con0.05.json deleted file mode 100644 index c4b1bd8..0000000 --- a/benchmark/synthetic/Pipeline/AutoEncoder/ae_pipeline_1416321641/ae_pipeline_1416321641_con0.05.json +++ /dev/null @@ -1 +0,0 @@ -{"id": "bc86df90-6d84-4e21-a116-3b04a42ddbd8", "schema": 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"version": "0.0.1", "python_path": "d3m.primitives.tods.detection_algorithm.pyod_ocsvm", "name": "TODS.anomaly_detection_primitives.OCSVMPrimitive"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.4.produce"}}, "outputs": [{"id": "produce"}], "hyperparams": {"contamination": {"type": "VALUE", "data": 0.25}}}, {"type": "PRIMITIVE", "primitive": {"id": "2530840a-07d4-3874-b7d8-9eb5e4ae2bf3", "version": "0.3.0", "python_path": "d3m.primitives.tods.data_processing.construct_predictions", "name": "Construct pipeline predictions output"}, "arguments": {"inputs": {"type": "CONTAINER", "data": "steps.5.produce"}, "reference": {"type": "CONTAINER", "data": "steps.1.produce"}}, "outputs": [{"id": "produce"}]}], "digest": "bc7f8e1a25104831ecb2a09cb8e188769d3bca541269e9622d7ef1e749ce238d"} \ No newline at end of file diff --git a/benchmark/synthetic/README.md b/benchmark/synthetic/README.md deleted file mode 100644 index a424a24..0000000 --- a/benchmark/synthetic/README.md +++ /dev/null @@ -1,52 +0,0 @@ -# Revisiting Time Series Outlier Detection:Definitions and Benchmarks - -This branch is the source code of experiment part of our paper. We provide everything needed when running the experiments: Dataset, Dataset Generator, Pipeline json, Python script, runner and the result we get from the experiments. - -## Resources -* Paper: Under review - -## Cite this Work: -If you find this work useful, you may cite this work: -``` -@misc{lai2020tods, - title={TODS: An Automated Time Series Outlier Detection System}, - author={Kwei-Harng Lai and Daochen Zha and Guanchu Wang and Junjie Xu and Yue Zhao and Devesh Kumar and Yile Chen and Purav Zumkhawaka and Minyang Wan and Diego Martinez and Xia Hu}, - year={2020}, - eprint={2009.09822}, - archivePrefix={arXiv}, - primaryClass={cs.DB} -} -``` - -## Datasets - -This All of the datasets were generated from the generators. Tuning parameters in the generators can get your own datasets. -The datasets used in the paper is provided in "unidataset" and "multidataset" - -## Pipeline - -This Pipeline json files are organized by different settings of algorithms. There are 5 outlier ratios in each setting. - -## Runner - -To run a pipeline, you can generate your own pipeline json file from script. Take AutoEncoder as an example: - -```python -python script/simple_algo/build_AutoEncoder_pipeline.py -``` -Then run the json using run\_pipeline in /runner -```python -python runner/run_pipeline.py --pipeline_path ae_pipeline_default_con0.05.json -``` - - - -Or you can also use the pipelines we provided in /Pipeline: - -```python -python runner/run_pipeline.py --pipeline_path Pipeline/AutoEncoder/ae_pipeline_default/ae_pipeline_default_con0.05.json -``` - - - -*Please refer master branch of TODS for details of running pipelines. diff --git a/benchmark/synthetic/multidataset/0.csv b/benchmark/synthetic/multidataset/0.csv deleted file mode 100644 index 16877c8..0000000 --- a/benchmark/synthetic/multidataset/0.csv +++ /dev/null @@ -1,401 +0,0 @@ -col_0,col_1,col_2,col_3,col_4,anomaly -0.09986898780971384,2.5577981938404752,0.0015782415802275407,4.5882450055169794,-1.9023533516086883,0 -0.42668075382716264,2.268975961096525,0.38476269488351417,4.511831256890637,-1.5823881067009786,0 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default_data_path = os.path.join(this_path, '../../datasets/anomaly/raw_data/yahoo_sub_5.csv') -default_data_path = os.path.join(this_path, '../unidataset/point_contextual_0.05.csv') - -parser = argparse.ArgumentParser(description='Arguments for running predefined pipelin.') -parser.add_argument('--table_path', type=str, default=default_data_path, - help='Input the path of the input data table') -parser.add_argument('--target_index', type=int, default=1, - help='Index of the ground truth (for evaluation)') -parser.add_argument('--metric',type=str, default='ALL', - help='Evaluation Metric (F1, F1_MACRO)') -parser.add_argument('--pipeline_path', - default=os.path.join(this_path, 'mp_pipeline.json'), - help='Input the path of the pre-built pipeline description') - -args = parser.parse_args() - -table_path = args.table_path -target_index = args.target_index # what column is the target -pipeline_path = args.pipeline_path -metric = args.metric # F1 on both label 0 and 1 - -# Read data and generate dataset -df = pd.read_csv(table_path) -dataset = generate_dataset(df, target_index) - -# Load the default pipeline -pipeline = load_pipeline(pipeline_path) - -# Run the pipeline -pipeline_result = evaluate_pipeline(dataset, pipeline, metric) -print(pipeline_result) -print(pipeline_result.scores) - diff --git a/benchmark/synthetic/runner/run_pipeline_multi1.py b/benchmark/synthetic/runner/run_pipeline_multi1.py deleted file mode 100644 index 52d0dbb..0000000 --- a/benchmark/synthetic/runner/run_pipeline_multi1.py +++ /dev/null @@ -1,81 +0,0 @@ -import sys -import argparse -import os -import pandas as pd - -from tods import generate_dataset, load_pipeline, evaluate_pipeline - -RATIO = 20 - - -this_path = os.path.dirname(os.path.abspath(__file__)) -# default_data_path = os.path.join(this_path, '../datasets/anomaly/raw_data/yahoo_sub_5.csv') -# default_data_path = os.path.join(this_path, 'dataset/point_contextual_0.05.csv') - -parser = argparse.ArgumentParser(description='Arguments for running predefined pipelin.') -# parser.add_argument('--table_path', type=str, default=os.path.join(this_path, 'dataset/point_contextual_0.05.csv'), -# help='Input the path of the input data table') -parser.add_argument('--target_index', type=int, default=5, - help='Index of the ground truth (for evaluation)') -parser.add_argument('--metric',type=str, default='ALL', - help='Evaluation Metric (F1, F1_MACRO)') -parser.add_argument('--pipeline_path', - default=os.path.join(this_path, 'mogaal_pipeline_k7_con0.05.json'), - help='Input the path of the pre-built pipeline description') - -result_container = [] -args = parser.parse_args() - -df = pd.read_csv(os.path.join(this_path, '../multidataset/0.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) -# print(pipeline_result) -# print(pipeline_result.scores) -# for i in list(pipeline_result.scores['value']): -# print(i) - -df = pd.read_csv(os.path.join(this_path, '../multidataset/1.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) - - -df = pd.read_csv(os.path.join(this_path, '../multidataset/2.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) - - - - -df = pd.read_csv(os.path.join(this_path, '../multidataset/3.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) - - - - -df = pd.read_csv(os.path.join(this_path, '../multidataset/4.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) - -for i in result_container: - for j in i: - print(j) - # print('\n') \ No newline at end of file diff --git a/benchmark/synthetic/runner/run_pipeline_multi2.py b/benchmark/synthetic/runner/run_pipeline_multi2.py deleted file mode 100644 index dbb2271..0000000 --- a/benchmark/synthetic/runner/run_pipeline_multi2.py +++ /dev/null @@ -1,71 +0,0 @@ -import sys -import argparse -import os -import pandas as pd - -from tods import generate_dataset, load_pipeline, evaluate_pipeline - -RATIO = 20 - - -this_path = os.path.dirname(os.path.abspath(__file__)) -# default_data_path = os.path.join(this_path, '../datasets/anomaly/raw_data/yahoo_sub_5.csv') -# default_data_path = os.path.join(this_path, 'dataset/point_contextual_0.05.csv') - -parser = argparse.ArgumentParser(description='Arguments for running predefined pipelin.') -# parser.add_argument('--table_path', type=str, default=os.path.join(this_path, 'dataset/point_contextual_0.05.csv'), -# help='Input the path of the input data table') -parser.add_argument('--target_index', type=int, default=5, - help='Index of the ground truth (for evaluation)') -parser.add_argument('--metric',type=str, default='ALL', - help='Evaluation Metric (F1, F1_MACRO)') -parser.add_argument('--pipeline_path', - default=os.path.join(this_path, 'mogaal_pipeline_k7_con0.1.json'), - help='Input the path of the pre-built pipeline description') - -result_container = [] -args = parser.parse_args() - -df = pd.read_csv(os.path.join(this_path, '../multidataset/01.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) -# print(pipeline_result) -# print(pipeline_result.scores) -# for i in list(pipeline_result.scores['value']): -# print(i) - -df = pd.read_csv(os.path.join(this_path, '../multidataset/12.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) - - -df = pd.read_csv(os.path.join(this_path, '../multidataset/23.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) - - - - -df = pd.read_csv(os.path.join(this_path, '../multidataset/34.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) - - -for i in result_container: - for j in i: - print(j) - # print('\n') \ No newline at end of file diff --git a/benchmark/synthetic/runner/run_pipeline_multi3.py b/benchmark/synthetic/runner/run_pipeline_multi3.py deleted file mode 100644 index 53fbfbf..0000000 --- a/benchmark/synthetic/runner/run_pipeline_multi3.py +++ /dev/null @@ -1,61 +0,0 @@ -import sys -import argparse -import os -import pandas as pd - -from tods import generate_dataset, load_pipeline, evaluate_pipeline - -RATIO = 20 - - -this_path = os.path.dirname(os.path.abspath(__file__)) -# default_data_path = os.path.join(this_path, '../datasets/anomaly/raw_data/yahoo_sub_5.csv') -# default_data_path = os.path.join(this_path, 'dataset/point_contextual_0.05.csv') - -parser = argparse.ArgumentParser(description='Arguments for running predefined pipelin.') -# parser.add_argument('--table_path', type=str, default=os.path.join(this_path, 'dataset/point_contextual_0.05.csv'), -# help='Input the path of the input data table') -parser.add_argument('--target_index', type=int, default=5, - help='Index of the ground truth (for evaluation)') -parser.add_argument('--metric',type=str, default='ALL', - help='Evaluation Metric (F1, F1_MACRO)') -parser.add_argument('--pipeline_path', - default=os.path.join(this_path, 'mogaal_pipeline_k7_con0.15.json'), - help='Input the path of the pre-built pipeline description') - -result_container = [] -args = parser.parse_args() - -df = pd.read_csv(os.path.join(this_path, '../multidataset/012.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) -# print(pipeline_result) -# print(pipeline_result.scores) -# for i in list(pipeline_result.scores['value']): -# print(i) - -df = pd.read_csv(os.path.join(this_path, '../multidataset/123.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) - - -df = pd.read_csv(os.path.join(this_path, '../multidataset/234.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) - - - -for i in result_container: - for j in i: - print(j) - # print('\n') \ No newline at end of file diff --git a/benchmark/synthetic/runner/run_pipeline_multi4.py b/benchmark/synthetic/runner/run_pipeline_multi4.py deleted file mode 100644 index bdb77ab..0000000 --- a/benchmark/synthetic/runner/run_pipeline_multi4.py +++ /dev/null @@ -1,53 +0,0 @@ -import sys -import argparse -import os -import pandas as pd - -from tods import generate_dataset, load_pipeline, evaluate_pipeline - -RATIO = 20 - - -this_path = os.path.dirname(os.path.abspath(__file__)) -# default_data_path = os.path.join(this_path, '../datasets/anomaly/raw_data/yahoo_sub_5.csv') -# default_data_path = os.path.join(this_path, 'dataset/point_contextual_0.05.csv') - -parser = argparse.ArgumentParser(description='Arguments for running predefined pipelin.') -# parser.add_argument('--table_path', type=str, default=os.path.join(this_path, 'dataset/point_contextual_0.05.csv'), -# help='Input the path of the input data table') -parser.add_argument('--target_index', type=int, default=5, - help='Index of the ground truth (for evaluation)') -parser.add_argument('--metric',type=str, default='ALL', - help='Evaluation Metric (F1, F1_MACRO)') -parser.add_argument('--pipeline_path', - default=os.path.join(this_path, 'mogaal_pipeline_k7_con0.2.json'), - help='Input the path of the pre-built pipeline description') - -result_container = [] -args = parser.parse_args() - -df = pd.read_csv(os.path.join(this_path, '../multidataset/0123.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) -# print(pipeline_result) -# print(pipeline_result.scores) -# for i in list(pipeline_result.scores['value']): -# print(i) - -df = pd.read_csv(os.path.join(this_path, '../multidataset/1234.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) - - - -for i in result_container: - for j in i: - print(j) - # print('\n') \ No newline at end of file diff --git a/benchmark/synthetic/runner/run_pipeline_multi5.py b/benchmark/synthetic/runner/run_pipeline_multi5.py deleted file mode 100644 index a97010a..0000000 --- a/benchmark/synthetic/runner/run_pipeline_multi5.py +++ /dev/null @@ -1,45 +0,0 @@ -import sys -import argparse -import os -import pandas as pd - -from tods import generate_dataset, load_pipeline, evaluate_pipeline - -RATIO = 20 - - -this_path = os.path.dirname(os.path.abspath(__file__)) -# default_data_path = os.path.join(this_path, '../datasets/anomaly/raw_data/yahoo_sub_5.csv') -# default_data_path = os.path.join(this_path, 'dataset/point_contextual_0.05.csv') - -parser = argparse.ArgumentParser(description='Arguments for running predefined pipelin.') -# parser.add_argument('--table_path', type=str, default=os.path.join(this_path, 'dataset/point_contextual_0.05.csv'), -# help='Input the path of the input data table') -parser.add_argument('--target_index', type=int, default=5, - help='Index of the ground truth (for evaluation)') -parser.add_argument('--metric',type=str, default='ALL', - help='Evaluation Metric (F1, F1_MACRO)') -parser.add_argument('--pipeline_path', - default=os.path.join(this_path, 'mogaal_pipeline_k7_con0.25.json'), - help='Input the path of the pre-built pipeline description') - -result_container = [] -args = parser.parse_args() - -df = pd.read_csv(os.path.join(this_path, '../multidataset/01234.csv')) -dataset = generate_dataset(df, args.target_index) -pipeline = load_pipeline(args.pipeline_path) - - -pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) -result_container.append(list(pipeline_result.scores['value'])) -# print(pipeline_result) -# print(pipeline_result.scores) -# for i in list(pipeline_result.scores['value']): -# print(i) - - -for i in result_container: - for j in i: - print(j) - # print('\n') \ No newline at end of file diff --git a/benchmark/synthetic/runner/run_pipeline_uni.py b/benchmark/synthetic/runner/run_pipeline_uni.py deleted file mode 100644 index a016722..0000000 --- a/benchmark/synthetic/runner/run_pipeline_uni.py +++ /dev/null @@ -1,86 +0,0 @@ -import sys -import argparse -import os -import pandas as pd - -from tods import generate_dataset, load_pipeline, evaluate_pipeline - - - -this_path = os.path.dirname(os.path.abspath(__file__)) -# default_data_path = os.path.join(this_path, '../datasets/anomaly/raw_data/yahoo_sub_5.csv') -# default_data_path = os.path.join(this_path, 'dataset/point_contextual_0.05.csv') - -parser = argparse.ArgumentParser(description='Arguments for running predefined pipelin.') -# parser.add_argument('--table_path', type=str, default=os.path.join(this_path, 'dataset/point_contextual_0.05.csv'), -# help='Input the path of the input data table') -parser.add_argument('--target_index', type=int, default=1, - help='Index of the ground truth (for evaluation)') -parser.add_argument('--metric',type=str, default='ALL', - help='Evaluation Metric (F1, F1_MACRO)') -# parser.add_argument('--pipeline_path', -# default=os.path.join(this_path, 'mp_pipeline.json'), -# help='Input the path of the pre-built pipeline description') - -args = parser.parse_args() - -pipeline_path_name = '../' + 'ocsvm_subseg_con' -pipeline_path_list = [0.05, 0.1, 0.1, 0.15, 0.15, 0.2, 0.2, 0.25] -dataset_list = [0.05, 0.05, 0.1, 0.1, 0.15, 0.15, 0.2, 0.2] - - -result_container = [] -for dat, pip in zip(dataset_list, pipeline_path_list): - pipeline_path = os.path.join(this_path, pipeline_path_name + str(pip) + '.json') - - df = pd.read_csv(os.path.join(this_path, '../unidataset/point_global_' + str(dat) + '.csv')) - dataset = generate_dataset(df, args.target_index) - pipeline = load_pipeline(pipeline_path) - pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) - result_container.append(list(pipeline_result.scores['value'])) - - -for dat, pip in zip(dataset_list, pipeline_path_list): - pipeline_path = os.path.join(this_path, pipeline_path_name + str(pip) + '.json') - - df = pd.read_csv(os.path.join(this_path, '../unidataset/point_contextual_' + str(dat) + '.csv')) - dataset = generate_dataset(df, args.target_index) - pipeline = load_pipeline(pipeline_path) - pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) - result_container.append(list(pipeline_result.scores['value'])) - - -for dat, pip in zip(dataset_list, pipeline_path_list): - pipeline_path = os.path.join(this_path, pipeline_path_name + str(pip) + '.json') - - df = pd.read_csv(os.path.join(this_path, '../unidataset/collective_global_' + str(dat) + '.csv')) - dataset = generate_dataset(df, args.target_index) - pipeline = load_pipeline(pipeline_path) - pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) - result_container.append(list(pipeline_result.scores['value'])) - - -for dat, pip in zip(dataset_list, pipeline_path_list): - pipeline_path = os.path.join(this_path, pipeline_path_name + str(pip) + '.json') - - df = pd.read_csv(os.path.join(this_path, '../unidataset/collective_seasonal_' + str(dat) + '.csv')) - dataset = generate_dataset(df, args.target_index) - pipeline = load_pipeline(pipeline_path) - pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) - result_container.append(list(pipeline_result.scores['value'])) - - -for dat, pip in zip(dataset_list, pipeline_path_list): - pipeline_path = os.path.join(this_path, pipeline_path_name + str(pip) + '.json') - - df = pd.read_csv(os.path.join(this_path, '../unidataset/collective_trend_' + str(dat) + '.csv')) - dataset = generate_dataset(df, args.target_index) - pipeline = load_pipeline(pipeline_path) - pipeline_result = evaluate_pipeline(dataset, pipeline, args.metric) - result_container.append(list(pipeline_result.scores['value'])) - - -for i in result_container: - for j in i: - print(j) - print('\n') \ No newline at end of file diff --git a/benchmark/synthetic/script/simple_algo/build_AutoEncoder_pipeline.py b/benchmark/synthetic/script/simple_algo/build_AutoEncoder_pipeline.py deleted file mode 100644 index d4faf2f..0000000 --- a/benchmark/synthetic/script/simple_algo/build_AutoEncoder_pipeline.py +++ /dev/null @@ -1,67 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: algorithm -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.pyod_ae')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') -# step_4.add_hyperparameter(name='hidden_neurons', argument_type=ArgumentType.VALUE, data=[1, 4, 16, 32, 16, 4, 1]) -# step_4.add_hyperparameter(name='epochs', argument_type=ArgumentType.VALUE, data=50) - -CONTAMINATION = 0.05 -step_4.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=CONTAMINATION) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: Predictions -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.5.produce') - -# Output to json -data = pipeline_description.to_json() -with open('ae_pipeline_default_con' + str(CONTAMINATION) + '.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/script/simple_algo/build_AutoRegression_pipeline.py b/benchmark/synthetic/script/simple_algo/build_AutoRegression_pipeline.py deleted file mode 100644 index 0b54004..0000000 --- a/benchmark/synthetic/script/simple_algo/build_AutoRegression_pipeline.py +++ /dev/null @@ -1,65 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: algorithm -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.AutoRegODetector')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') -SIZE = 10 -step_4.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=0.25) -step_4.add_hyperparameter(name='window_size', argument_type=ArgumentType.VALUE, data=SIZE) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: Predictions -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.5.produce') - -# Output to json -data = pipeline_description.to_json() -with open('ar_pipeline_win' + str(SIZE) + '.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/script/simple_algo/build_LSTMOD_pipeline.py b/benchmark/synthetic/script/simple_algo/build_LSTMOD_pipeline.py deleted file mode 100644 index 65262b7..0000000 --- a/benchmark/synthetic/script/simple_algo/build_LSTMOD_pipeline.py +++ /dev/null @@ -1,72 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: algorithm -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.LSTMODetector')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') - -step_4.add_hyperparameter(name='feature_dim', argument_type=ArgumentType.VALUE, data=1) -step_4.add_hyperparameter(name='n_hidden_layer', argument_type=ArgumentType.VALUE, data=2) -step_4.add_hyperparameter(name='hidden_dim', argument_type=ArgumentType.VALUE, data=4) -step_4.add_hyperparameter(name='epochs', argument_type=ArgumentType.VALUE, data=50) -step_4.add_hyperparameter(name='min_attack_time', argument_type=ArgumentType.VALUE, data=1) -step_4.add_hyperparameter(name='diff_group_method', argument_type=ArgumentType.VALUE, data='min') - -CONTAMINATION = 0.25 -step_4.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=CONTAMINATION) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: Predictions -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.5.produce') - -# Output to json -data = pipeline_description.to_json() -with open('lstm_feature1_layer2_dim4_attak1_min_con' + str(CONTAMINATION) + '.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/script/simple_algo/build_OCSVM_pipeline.py b/benchmark/synthetic/script/simple_algo/build_OCSVM_pipeline.py deleted file mode 100644 index 87d5a2c..0000000 --- a/benchmark/synthetic/script/simple_algo/build_OCSVM_pipeline.py +++ /dev/null @@ -1,63 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: algorithm -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.pyod_ocsvm')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') -step_4.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=0.25) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: Predictions -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.5.produce') - -# Output to json -data = pipeline_description.to_json() -with open('ocsvm_pipeline.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/script/simple_algo/build_iForest_pipeline.py b/benchmark/synthetic/script/simple_algo/build_iForest_pipeline.py deleted file mode 100644 index 0de281f..0000000 --- a/benchmark/synthetic/script/simple_algo/build_iForest_pipeline.py +++ /dev/null @@ -1,63 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: algorithm -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.pyod_iforest')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') -step_4.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=0.25) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: Predictions -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.5.produce') - -# Output to json -data = pipeline_description.to_json() -with open('iforest_pipeline.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/script/simple_algo/build_matrixprofile_pipeline.py b/benchmark/synthetic/script/simple_algo/build_matrixprofile_pipeline.py deleted file mode 100644 index 90cd61c..0000000 --- a/benchmark/synthetic/script/simple_algo/build_matrixprofile_pipeline.py +++ /dev/null @@ -1,65 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: algorithm -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.matrix_profile')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') -step_4.add_hyperparameter(name='window_size', argument_type=ArgumentType.VALUE, data=10) -CONTAMINATION = 0.25 -step_4.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=CONTAMINATION) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: Predictions -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.5.produce') - -# Output to json -data = pipeline_description.to_json() -with open('mp_pipeline_win10_con' + str(CONTAMINATION) + '.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/script/simple_algo/build_mogaal_pipeline.py b/benchmark/synthetic/script/simple_algo/build_mogaal_pipeline.py deleted file mode 100644 index c714e9e..0000000 --- a/benchmark/synthetic/script/simple_algo/build_mogaal_pipeline.py +++ /dev/null @@ -1,67 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: algorithm -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.pyod_mogaal')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') -step_4.add_hyperparameter(name='k', argument_type=ArgumentType.VALUE, data=9) -step_4.add_hyperparameter(name='stop_epochs', argument_type=ArgumentType.VALUE, data=50) - -CONTAMINATION = 0.25 -step_4.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=CONTAMINATION) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: Predictions -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.5.produce') - -# Output to json -data = pipeline_description.to_json() -with open('mogaal_pipeline_k9_con' + str(CONTAMINATION) + '.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/script/subseg_algo/build_AutoEncoder_pipeline.py b/benchmark/synthetic/script/subseg_algo/build_AutoEncoder_pipeline.py deleted file mode 100644 index 1096c8e..0000000 --- a/benchmark/synthetic/script/subseg_algo/build_AutoEncoder_pipeline.py +++ /dev/null @@ -1,71 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: SubSeg -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.timeseries_processing.subsequence_segmentation')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') -step_4.add_hyperparameter(name='window_size', argument_type=ArgumentType.VALUE, data=10) -step_4.add_hyperparameter(name='step', argument_type=ArgumentType.VALUE, data=1) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: algorithm -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.pyod_ae')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=0.25) -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Step 6: Predictions -step_6 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_6.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.5.produce') -step_6.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_6.add_output('produce') -pipeline_description.add_step(step_6) - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.6.produce') - -# Output to json -data = pipeline_description.to_json() -with open('ae_pipeline.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/script/subseg_algo/build_OCSVM_pipeline.py b/benchmark/synthetic/script/subseg_algo/build_OCSVM_pipeline.py deleted file mode 100644 index e3edd88..0000000 --- a/benchmark/synthetic/script/subseg_algo/build_OCSVM_pipeline.py +++ /dev/null @@ -1,72 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: SubSeg -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.timeseries_processing.subsequence_segmentation')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') -step_4.add_hyperparameter(name='window_size', argument_type=ArgumentType.VALUE, data=10) -step_4.add_hyperparameter(name='step', argument_type=ArgumentType.VALUE, data=1) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: algorithm -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.pyod_ocsvm')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=0.25) -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Step 6: Predictions -step_6 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_6.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.5.produce') -step_6.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_6.add_output('produce') -pipeline_description.add_step(step_6) - - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.6.produce') - -# Output to json -data = pipeline_description.to_json() -with open('ocsvm_pipeline.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/script/subseg_algo/build_iForest_pipeline.py b/benchmark/synthetic/script/subseg_algo/build_iForest_pipeline.py deleted file mode 100644 index ad1d8f1..0000000 --- a/benchmark/synthetic/script/subseg_algo/build_iForest_pipeline.py +++ /dev/null @@ -1,71 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: SubSeg -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.timeseries_processing.subsequence_segmentation')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') -step_4.add_hyperparameter(name='window_size', argument_type=ArgumentType.VALUE, data=10) -step_4.add_hyperparameter(name='step', argument_type=ArgumentType.VALUE, data=1) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: algorithm -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.pyod_iforest')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=0.25) -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Step 6: Predictions -step_6 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_6.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.5.produce') -step_6.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_6.add_output('produce') -pipeline_description.add_step(step_6) - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.6.produce') - -# Output to json -data = pipeline_description.to_json() -with open('iforest_pipeline.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/script/subseg_algo/build_mogaal_pipeline.py b/benchmark/synthetic/script/subseg_algo/build_mogaal_pipeline.py deleted file mode 100644 index 418e163..0000000 --- a/benchmark/synthetic/script/subseg_algo/build_mogaal_pipeline.py +++ /dev/null @@ -1,74 +0,0 @@ -from d3m import index -from d3m.metadata.base import ArgumentType -from d3m.metadata.pipeline import Pipeline, PrimitiveStep - - -# Creating pipeline -pipeline_description = Pipeline() -pipeline_description.add_input(name='inputs') - -# Step 0: dataset_to_dataframe -step_0 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe')) -step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') -step_0.add_output('produce') -pipeline_description.add_step(step_0) - -# Step 1: column_parser -step_1 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.column_parser')) -step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_1.add_output('produce') -pipeline_description.add_step(step_1) - -# Step 2: extract_columns_by_semantic_types(attributes) -step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_2.add_output('produce') -step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/Attribute']) -pipeline_description.add_step(step_2) - -# Step 3: extract_columns_by_semantic_types(targets) -step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) -step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') -step_3.add_output('produce') -step_3.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, - data=['https://metadata.datadrivendiscovery.org/types/TrueTarget']) -pipeline_description.add_step(step_3) - -attributes = 'steps.2.produce' -targets = 'steps.3.produce' - -# Step 4: SubSeg -step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.timeseries_processing.subsequence_segmentation')) -step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') -step_4.add_hyperparameter(name='window_size', argument_type=ArgumentType.VALUE, data=10) -step_4.add_hyperparameter(name='step', argument_type=ArgumentType.VALUE, data=1) -step_4.add_output('produce') -pipeline_description.add_step(step_4) - -# Step 5: algorithm -step_5 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.pyod_mogaal')) -step_5.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.4.produce') -step_5.add_hyperparameter(name='k', argument_type=ArgumentType.VALUE, data=5) -step_5.add_hyperparameter(name='stop_epochs', argument_type=ArgumentType.VALUE, data=20) -CONTAMINATION = 0.25 -step_5.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=CONTAMINATION) -step_5.add_output('produce') -pipeline_description.add_step(step_5) - -# Step 6: Predictions -step_6 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) -step_6.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.5.produce') -step_6.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') -step_6.add_output('produce') -pipeline_description.add_step(step_6) - -# Final Output -pipeline_description.add_output(name='output predictions', data_reference='steps.6.produce') - -# Output to json -data = pipeline_description.to_json() -with open('mogaal_pipeline_k5_con' + str(CONTAMINATION) + '.json', 'w') as f: - f.write(data) - print(data) - diff --git a/benchmark/synthetic/unidataset/collective_global_0.05.csv b/benchmark/synthetic/unidataset/collective_global_0.05.csv deleted file mode 100644 index 680d837..0000000 --- a/benchmark/synthetic/unidataset/collective_global_0.05.csv +++ /dev/null @@ -1,201 +0,0 @@ -value,anomaly -0.09986898780971384,0 -0.42668075382716264,0 -0.6067254892442279,0 -1.026191870148394,0 -1.3130920862948086,0 -1.372578357388813,0 -1.5169534615693163,0 -1.4815720155216556,0 -1.3575624360190817,0 -1.1426748483692133,0 -0.9141548426852297,0 -0.6424146320629325,0 -0.1156199250576989,0 --0.11087929449775366,0 --0.535039569267668,0 --0.848292557476434,0 --1.2410150300510123,0 --1.347105312815382,0 --1.3620906009552893,0 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--1.33244674456451,0 --1.1954574323898806,0 --1.103493960813835,0 --0.635092883522263,0 --0.41593309174386545,0 diff --git a/benchmark/synthetic/unidataset/collective_global_0.1.csv b/benchmark/synthetic/unidataset/collective_global_0.1.csv deleted file mode 100644 index 6e69517..0000000 --- a/benchmark/synthetic/unidataset/collective_global_0.1.csv +++ /dev/null @@ -1,201 +0,0 @@ -value,anomaly -0.09986898780971384,0 -0.42668075382716264,0 -0.6067254892442279,0 -1.026191870148394,0 -1.3130920862948086,0 -1.372578357388813,0 -1.5169534615693163,0 -1.4815720155216556,0 -1.3575624360190817,0 -1.1426748483692133,0 -0.9141548426852297,0 -0.6424146320629325,0 -0.1156199250576989,0 --0.11087929449775366,0 --0.535039569267668,0 --0.848292557476434,0 --1.2410150300510123,0 --1.347105312815382,0 --1.3620906009552893,0 --1.5780254590763032,0 --1.5749143954920735,0 --1.3972448104454407,0 --1.006865396592991,0 --0.5437579613492407,0 --0.288757986741575,0 -0.12544666599808804,0 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a/benchmark/synthetic/unidataset/collective_global_0.15.csv b/benchmark/synthetic/unidataset/collective_global_0.15.csv deleted file mode 100644 index db9af17..0000000 --- a/benchmark/synthetic/unidataset/collective_global_0.15.csv +++ /dev/null @@ -1,201 +0,0 @@ -value,anomaly -0.09986898780971384,0 -0.42668075382716264,0 -0.6067254892442279,0 -1.026191870148394,0 -1.3130920862948086,0 -1.372578357388813,0 -1.5169534615693163,0 -1.4815720155216556,0 -1.3575624360190817,0 -1.1426748483692133,0 -0.9141548426852297,0 -0.6424146320629325,0 -0.1156199250576989,0 --0.11087929449775366,0 --0.535039569267668,0 --0.848292557476434,0 --1.2410150300510123,0 --1.347105312815382,0 --1.3620906009552893,0 --1.5780254590763032,0 --1.5749143954920735,0 --1.3972448104454407,0 --1.006865396592991,0 --0.5437579613492407,0 --0.288757986741575,0 -0.12544666599808804,0 -0.38047102193492566,0 -0.8274802394345917,0 -1.0064770597956003,0 -1.3124822021174958,0 -1.406535985292213,0 -1.4558419165844965,0 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a/benchmark/synthetic/unidataset/collective_trend_0.05.csv b/benchmark/synthetic/unidataset/collective_trend_0.05.csv deleted file mode 100644 index adf3d7d..0000000 --- a/benchmark/synthetic/unidataset/collective_trend_0.05.csv +++ /dev/null @@ -1,201 +0,0 @@ -value,anomaly -0.09986898780971384,0 -0.42668075382716264,0 -0.6067254892442279,0 -1.026191870148394,0 -1.3130920862948086,0 -1.372578357388813,0 -1.5169534615693163,0 -1.4815720155216556,0 -1.3575624360190817,0 -1.1426748483692133,0 -0.9141548426852297,0 -0.6424146320629325,0 -0.1156199250576989,0 --0.11087929449775366,0 --0.535039569267668,0 --0.848292557476434,0 --1.2410150300510123,0 --1.347105312815382,0 --1.3620906009552893,0 --1.5780254590763032,0 --1.5749143954920735,0 --1.3972448104454407,0 --1.006865396592991,0 --0.5437579613492407,0 --0.288757986741575,0 -0.12544666599808804,0 -0.38047102193492566,0 -0.8274802394345917,0 -1.0064770597956003,0 -1.3124822021174958,0 -1.406535985292213,0 -1.4558419165844965,0 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a/benchmark/synthetic/unidataset/point_contextual_0.1.csv b/benchmark/synthetic/unidataset/point_contextual_0.1.csv deleted file mode 100644 index 4d53230..0000000 --- a/benchmark/synthetic/unidataset/point_contextual_0.1.csv +++ /dev/null @@ -1,201 +0,0 @@ -value,anomaly -0.09986898780971384,0 -0.42668075382716264,0 -0.6067254892442279,0 -1.026191870148394,0 -1.3130920862948086,0 -1.372578357388813,0 -1.5169534615693163,0 -1.4815720155216556,0 -1.3575624360190817,0 -1.1426748483692133,0 -0.9141548426852297,0 -0.6424146320629325,0 -0.3162295631333156,1 --0.11087929449775366,0 --0.535039569267668,0 --0.848292557476434,0 --1.2410150300510123,0 --1.347105312815382,0 --1.3620906009552893,0 --1.5780254590763032,0 --1.5749143954920735,0 --1.3972448104454407,0 --1.006865396592991,0 --0.5437579613492407,0 --0.8002542787965127,1 -0.12544666599808804,0 -0.38047102193492566,0 -0.8274802394345917,0 -1.0064770597956003,0 -1.3124822021174958,0 -1.406535985292213,0 -1.4558419165844965,0 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