from d3m import index from d3m.metadata.base import ArgumentType from d3m.metadata.pipeline import Pipeline, PrimitiveStep from d3m.metadata import hyperparams # Creating pipeline pipeline_description = Pipeline() pipeline_description.add_input(name='inputs') # Step 0: dataset_to_dataframe primitive_0 = index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe') step_0 = PrimitiveStep(primitive=primitive_0) step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') step_0.add_output('produce') pipeline_description.add_step(step_0) # # Step 1: column_parser primitive_1 = index.get_primitive('d3m.primitives.tods.data_processing.column_parser') step_1 = PrimitiveStep(primitive=primitive_1) step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') step_1.add_output('produce') pipeline_description.add_step(step_1) # Step 2: extract_columns_by_semantic_types(attributes) step_2 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.extract_columns_by_semantic_types')) step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') step_2.add_output('produce') step_2.add_hyperparameter(name='semantic_types', argument_type=ArgumentType.VALUE, data=['https://metadata.datadrivendiscovery.org/types/Attribute']) pipeline_description.add_step(step_2) # Step 3: SOD step_3 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.detection_algorithm.pyod_sod')) step_3.add_hyperparameter(name='contamination', argument_type=ArgumentType.VALUE, data=0.1) step_3.add_hyperparameter(name='use_semantic_types', argument_type=ArgumentType.VALUE, data=True) step_3.add_hyperparameter(name='use_columns', argument_type=ArgumentType.VALUE, data=(2,3,4)) step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') step_3.add_output('produce') pipeline_description.add_step(step_3) # Step 4: Predictions step_4 = PrimitiveStep(primitive=index.get_primitive('d3m.primitives.tods.data_processing.construct_predictions')) step_4.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.3.produce') step_4.add_argument(name='reference', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') step_4.add_output('produce') pipeline_description.add_step(step_4) # Final Output pipeline_description.add_output(name='output predictions', data_reference='steps.4.produce') # Output to JSON data = pipeline_description.to_json() with open('example_pipeline.json', 'w') as f: f.write(data) print(data)