from d3m import index from d3m.metadata.base import ArgumentType from d3m.metadata.pipeline import Pipeline, PrimitiveStep from d3m.metadata import hyperparams # -> dataset_to_dataframe -> column_parser -> extract_columns_by_semantic_types(attributes) -> imputer -> random_forest # extract_columns_by_semantic_types(targets) -> ^ # Creating pipeline pipeline_description = Pipeline() pipeline_description.add_input(name='inputs') # Step 0: dataset_to_dataframe primitive_0 = index.get_primitive('d3m.primitives.tods.data_processing.dataset_to_dataframe') step_0 = PrimitiveStep(primitive=primitive_0) step_0.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='inputs.0') step_0.add_output('produce') pipeline_description.add_step(step_0) # # Step 1: column_parser primitive_1 = index.get_primitive('d3m.primitives.tods.data_processing.column_parser') step_1 = PrimitiveStep(primitive=primitive_1) step_1.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.0.produce') step_1.add_output('produce') pipeline_description.add_step(step_1) # # Step 2: Standardization primitive_2 = index.get_primitive('d3m.primitives.tods.timeseries_processing.transformation.standard_scaler') step_2 = PrimitiveStep(primitive=primitive_2) step_2.add_hyperparameter(name='use_semantic_types', argument_type=ArgumentType.VALUE, data=True) step_2.add_hyperparameter(name='use_columns', argument_type=ArgumentType.VALUE, data=(2,3,4,5,6)) step_2.add_hyperparameter(name='return_result', argument_type=ArgumentType.VALUE, data='append') step_2.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.1.produce') step_2.add_output('produce') pipeline_description.add_step(step_2) # # Step 3: test primitive # primitive_3 = index.get_primitive('d3m.primitives.anomaly_detection.KNNPrimitive') primitive_3 = index.get_primitive('d3m.primitives.tods.feature_analysis.statistical_vec_sum') step_3 = PrimitiveStep(primitive=primitive_3) step_3.add_hyperparameter(name='window_size', argument_type=ArgumentType.VALUE, data=4) step_3.add_hyperparameter(name='use_semantic_types', argument_type=ArgumentType.VALUE, data=True) step_3.add_hyperparameter(name='use_columns', argument_type=ArgumentType.VALUE, data=(5,6)) # There is sth wrong with multi-dimensional step_3.add_hyperparameter(name='return_result', argument_type=ArgumentType.VALUE, data='append') step_3.add_argument(name='inputs', argument_type=ArgumentType.CONTAINER, data_reference='steps.2.produce') step_3.add_output('produce') pipeline_description.add_step(step_3) # Final Output pipeline_description.add_output(name='output', data_reference='steps.3.produce') # Output to YAML yaml = pipeline_description.to_yaml() with open('pipeline.yml', 'w') as f: f.write(yaml) # Or you can output json #data = pipline_description.to_json()